Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq1521 100 1e-16 >seq1521 Length=1535 Score = 100 bits (110), Expect = 1e-16 Identities = 280/427 (66%), Gaps = 12/427 (3%) Strand=Plus/Plus Query 51915 GGCGTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGT 51974 ||||| | |||||||| |||||||| |||| |||||| | | || || || ||||| Sbjct 22 GGCGTTACAATTTGGGATGAATGGGCAGATGCGAATGGTGAATTAGGCCCGGTATATGGG 81 Query 51975 AAGCAGTGGCGTAGTTGGGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTC 52034 | |||||| | |||||| | | | || || || || || ||||| |||||| Sbjct 82 CATCAGTGGAGGAGTTGGCAGGGAGCTGATGGTAAAAGTATTGACCAGATTGCTGAAGTA 141 Query 52035 GTCAAATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTG 52094 | || |||||| || |||| |||||||| || || || ||| |||||||| Sbjct 142 ATACAACAAATTAAATACAATCCCGATAGTCGGCGTTTAATGGTGAGTGCATGGAATGTT 201 Query 52095 GGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCT 52154 ||||| | ||||| || ||||||||| || | || || || ||||| || Sbjct 202 ACCGATTTACCAAAAATGGCATTAATGCCCTGCCATGCATTGTTTCAGTTTTATGTGGCC 261 Query 52155 GAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCG 52214 | || | | ||||| | ||||| || ||| || | || || ||||||||| Sbjct 262 AATGGACAATTAAGCTGCCAGCTATATCAACGCAGTGCTGATGTATTTTTAGGCGTTCCG 321 Query 52215 TTTAACATTGCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCAGTTGGCCTTGAT 52274 || || |||||| ||| | ||| | || ||||||| | || ||| | |||| Sbjct 322 TTCAATATTGCCTCTTATGCTTTGTTAACCTTAATGATTGCGC-AG--GTTTG---TGAT 375 Query 52275 GT------TGGTGAATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCATGTA 52328 | |||||||| ||| ||| ||| || || ||| | ||||| |||||| | Sbjct 376 TTACAACCCGGTGAATTTATTCATACTTTTGGTGATGTGCATTTATACAATAACCATATT 435 Query 52329 GATCAGG 52335 || |||| Sbjct 436 GAACAGG 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190090814775170