Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq17 104 5e-17 seq1 89.7 1e-12 seq83 87.8 4e-12 >seq17 Length=130260 Score = 104 bits (114), Expect = 5e-17 Identities = 135/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 230456 TGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTT----TGTT 230511 || |||| | || |||| ||| |||||||||||||| || || || | | ||| Sbjct 8952 TGCACGCAGCCCTCATGGCACAATACATCGAATTCGTTGCGGATCGGCTCCTCACATGT- 9010 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 ||||| | || || | | |||| ||| ||| ||||||| |||||||| || || Sbjct 9011 ---CTTGGCTCTGACAAGATTTTCAACGCTAGGAATCCCTTTGACTTTATGGACCTGATC 9067 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 || || ||||| || |||||||||||||| ||||| ||| ||||||| || | | | || Sbjct 9068 TCTCTCCAAGGTAAAACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAAAAGGCCGGC 9127 Query 230632 GTGATG 230637 |||||| Sbjct 9128 GTGATG 9133 >seq1 Length=1465153 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||| | ||||||||||||||||||||||| ||||||| |||||||||| ||||||||| Sbjct 1350166 TGCCGATTTAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGAG 1350107 Query 165769 CCCC 165772 |||| Sbjct 1350106 CCCC 1350103 >seq83 Length=85048 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| Sbjct 55987 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGAGCCCC 55932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057812276334950