Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq553 102 5e-17 seq43 96.9 2e-15 >seq553 Length=498168 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||| ||| | ||| ||||| ||||| |||||||| || || || | | || || Sbjct 350830 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 350771 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 | ||| || || |||||||| || |||||||| || || | || |||||||| Sbjct 350770 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 350711 Query 34301 ATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTG 34360 || || ||||| || | || | ||| | | || ||||||| |||||||||||| Sbjct 350710 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 350651 Query 34361 CCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| |||||||| ||||| ||||| Sbjct 350650 CCCGTGAGGGTTTTCACGAAGATTTGCAT 350622 >seq43 Length=112461 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || || || | | | || |||| ||||||||| || ||| Sbjct 60649 TCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAA 60708 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||| || || | || ||||| || |||||| ||| | || Sbjct 60709 ATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTT 60768 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| || |||||||| || |||||||| || ||| Sbjct 60769 TCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACA 60828 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 60829 AAGATCTGCAT 60839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323068594114400