Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq553 95.1 1e-14 seq43 86.0 5e-12 >seq553 Length=498168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || ||||| |||||||| |||||||| || || | | || || Sbjct 350831 TACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTC 350772 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || |||||||| ||||| |||| ||||| || || || || | || |||||||| Sbjct 350771 GAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTG 350712 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||| ||| || | | | | ||| | |||||| |||| || || || || Sbjct 350711 GATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTT 350652 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| || || ||||| ||||||||||| ||| || Sbjct 350651 CCCCGTGAGGGTTTTCACGAAGATTTGCATTTTGTCT 350615 >seq43 Length=112461 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||||||||||||||| || ||| | | || ||| Sbjct 60403 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCC 60462 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | ||||| || || ||||| | || ||||| ||| | Sbjct 60463 AGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGA 60522 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | || ||| || |||| || || |||||| Sbjct 60523 ATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTG 60582 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||||||||||||||| || |||||| Sbjct 60583 CCAGTCAGAGTCTTCACAAATATCTGCATG 60612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071035043165