Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq43 82.4 6e-11 >seq43 Length=112461 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||||||||| || || | || ||||| || || || | || || || | Sbjct 60612 CATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATC 60553 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 || | | |||| ||| |||| ||| ||| | || |||||| | || ||| || Sbjct 60552 AGATACCATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCA 60493 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||| | || | ||| ||||| || ||||| ||| || ||| | ||||||| Sbjct 60492 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAA 60433 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAAT 25063 ||| ||||| ||| | || |||||||| || | || | || || || |||| Sbjct 60432 CATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTCTACGAGGCGGGCAAT 60380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418299590160800