Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq43 100 3e-16 seq553 86.0 6e-12 >seq43 Length=112461 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || ||||||| ||||| ||| ||||||| || || || || || ||||||||||| Sbjct 60382 TGCCCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCA 60441 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | ||| || || || || || || || ||| | || ||||| |||||||| ||| Sbjct 60442 GAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGA 60501 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || |||||||| || || ||| ||| || | | ||| | || || | || || Sbjct 60502 GGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCA 60561 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || | |||||||| |||| || || || ||||| ||||| Sbjct 60562 ACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 60611 >seq553 Length=498168 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 142993 TTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATA 143052 ||| || || ||||||||||| | || ||| || ||||| ||||| ||||| | Sbjct 350813 TTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTGTTTTCCAGCGAA 350754 Query 143053 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112 |||||||| |||||||| || || |||||||| ||||| ||||| |||| | Sbjct 350753 AATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTTCGCCTTTACATT 350694 Query 143113 TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172 ||| | || |||| || || || || | || | || || || || | ||||| || Sbjct 350693 TTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGTGAGGGTTTTCAC 350634 Query 143173 GAATATTTGCAT 143184 ||| |||||||| Sbjct 350633 GAAGATTTGCAT 350622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507008917906800