Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq43 107 2e-18 seq553 105 6e-18 >seq43 Length=112461 Score = 107 bits (118), Expect = 2e-18 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCCT 48575 || |||||||| || |||||| |||||||||||||||| || |||| || | |||| Sbjct 60631 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG-AAAGTGTCCTGC-CATCCT 60688 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | |||| | |||||||||||| || | | |||||| ||| Sbjct 60689 CCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCT 60748 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | |||||||| | | ||| || | || ||||||| Sbjct 60749 GGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTT 60808 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | || |||||||| || ||||| |||||||| ||| Sbjct 60809 TCCCTGTGAGAGTCTTGACAAAGATCTGCATTGTG 60843 Score = 105 bits (116), Expect = 6e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCCT 48575 || |||||||| || |||||| |||||||||||||||| || |||| || | |||| Sbjct 60403 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG-AAAGTGTCCTGC-CATCCT 60460 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | |||| | |||||||||||| || | | |||||| ||| Sbjct 60461 CCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCT 60520 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | | |||||||| | | ||| || | ||| || || | Sbjct 60521 GAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCT 60580 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || ||||| |||||||| |||||||| Sbjct 60581 TGCCAGTCAGAGTCTTCACAAATATCTGCAT 60611 >seq553 Length=498168 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||||| ||||| || ||||||||||| | | | | | ||||| Sbjct 350830 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 350771 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| || || || |||| | |||||||||||| ||| | | ||||||||| Sbjct 350770 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 350711 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 |||||| ||| | | | |||||||| | || |||| || | || |||||||| Sbjct 350710 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 350651 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || ||||| |||||||| || || ||||| ||||| Sbjct 350650 CCCGTGAGGGTTTTCACGAAGATTTGCATTTTGTCT 350615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421246759090865