Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq388 123 4e-24 >seq388 Length=230631 Score = 123 bits (136), Expect = 4e-24 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||| | || ||||| || || ||||||||||| |||||||| ||||| || || | ||| Sbjct 173223 CTTAGGGACAACATTCAGGGTATCACCAAGCCCGCTATCCGCCGTCTAGCGCGCAGGGGT 173164 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| ||||||| || |||| ||||||||||||| |||| | ||| ||||| Sbjct 173163 GGTGTGAAGCGTATCTCTGGGCTGATCTACGAAGAGATTCGTGGTGTTCTCAAGGTCTTC 173104 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||| | || || | ||| |||||||| ||| | ||||| || Sbjct 173103 CTTGGGGGTATCATCAAGGACGCGGTTACCTACACCGAGCATGCTCGCAGAAAGACCGTT 173044 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| ||||||| | || || || | || || ||||| Sbjct 173043 ACCGCCATGGACGTTGTGTACGCCCTTAAGCGCCAAGG 173006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074409124445