Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq43 118 1e-21 seq553 87.8 2e-12 seq35 82.4 7e-11 >seq43 Length=112461 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | ||||||||| || ||||| | ||| |||||||| |||||||||||||| Sbjct 60612 GCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA 60671 Query 131067 CATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | || | || | ||||| ||||||||||| || | || | ||||||||| || |||| Sbjct 60672 AAGTGTCCTGCCA-TCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAG 60730 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||| || || ||| || ||| | | || | ||||| | | ||| | Sbjct 60731 GAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAA 60790 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || || ||||| || || || |||||||| Sbjct 60791 CATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 60839 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | |||||| || ||||| | ||| |||||||| |||||||||||||| Sbjct 60385 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 60444 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | ||||| ||||||||||| || | || | ||||||||| || ||||| Sbjct 60445 AGTGTCCTGCCA-TCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGG 60503 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || ||||| || || ||| | | || ||| | | || | ||||| | | ||| | Sbjct 60504 AATGCCTTCCTTATC-CTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAA 60562 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | || | || || || || ||||| || || || ||||||||| Sbjct 60563 CGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCATG 60612 >seq553 Length=498168 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 ||||| || ||||||||||| | ||| | | ||||| ||||| || || ||| | Sbjct 350812 TCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTGTTTTCCAGCGAAA 350753 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | ||||||||| || || || || ||||| ||||| ||||||| ||| | | Sbjct 350752 ATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTTCGCCTTTACATTT 350693 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | ||||| | | ||| | ||| | || | |||||| || || || ||||| ||| Sbjct 350692 TCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGTGAGGGTTTTCACG 350633 Query 131224 AAAATCTGCAT 131234 || || ||||| Sbjct 350632 AAGATTTGCAT 350622 >seq35 Length=402807 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 145631 GACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCAC 145690 || ||||| || || || || ||| |||| | |||| | ||||| ||| |||| Sbjct 220530 GAGGCCAAGTTGCACACAGCGACCTCGTCGGGACTGGTGTACTCCACGATTTCGCAGCAC 220471 Query 145691 AAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCC 145750 | ||| || || ||| | |||| |||||||| || || ||||||||||| |||||| Sbjct 220470 AGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGTTGCTCTTCCTGTTGCATGCGTCC 220411 Query 145751 TTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA 145798 ||||| | |||||| || ||| || || | ||||| | || |||| Sbjct 220410 TTGTACATCATGTAGGGGGTGCCTGTTTCGATCTGCGATTGCAGGATA 220363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472007696361600