Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq535 136 3e-27 seq43 122 6e-23 seq553 95.1 8e-15 seq89 84.2 1e-11 >seq535 Length=2091 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1806 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1747 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 1746 TAATCCATTCATGCACGTCACTAATTAGATGACGA 1712 >seq43 Length=112461 Score = 122 bits (134), Expect = 6e-23 Identities = 180/251 (72%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 38069 ACAAATACAAATCCAATCATTACCA-CCTCTCAAACGCAACACCAAATGAAGAGTGCTCT 38127 ||| |||||| |||| ||||| || |||| | ||||| ||||||||||| || || Sbjct 60364 ACATATACAA-TCCA-TCATTGCCCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACT 60421 Query 38128 CCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATA 38187 |||| ||||| ||||||||||| | | | || || | || || |||||||| | Sbjct 60422 CCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAA 60481 Query 38188 TTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 | || || || ||||| | || | |||||| || ||| ||| ||| ||||||||| | Sbjct 60482 TGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTT 60541 Query 38248 GGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGA 38307 || |||||| ||||| || ||||| || || || || |||| || ||||| | Sbjct 60542 CGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAA 60601 Query 38308 ATATCTGCATG 38318 ||||||||||| Sbjct 60602 ATATCTGCATG 60612 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||||||||| ||||||||||| || |||||| ||||| ||||||||||| Sbjct 60613 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 60672 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | || || |||||||| || || || || ||||| | || Sbjct 60673 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 60732 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| || ||| ||||||||| | || |||||| ||||| Sbjct 60733 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 60792 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| ||||| || || | || || || || |||||||| Sbjct 60793 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 60839 >seq553 Length=498168 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||||||||| ||||| || || |||||||| || | | | || || Sbjct 350830 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 350771 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||| || || || || || || ||||| | || | |||||| ||||| Sbjct 350770 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 350711 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| ||||| | || ||||| | || || || | || || ||||| Sbjct 350710 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 350651 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| | |||||||||||| || ||||| || Sbjct 350650 CCCGTGAGGGTTTTCACGAAGATTTGCATTTT 350619 >seq89 Length=80754 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | | |||| ||||||| |||||| |||| |||||||||||||||||||||||| Sbjct 77683 CTCTCTTTCCCAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCGC 77624 Query 20007 GGTAATATTTAGCCTT 20022 | |||| | ||| || Sbjct 77623 GCCAATAGTAAGCTTT 77608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943668923815