Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq553 123 6e-23 seq17 102 2e-16 seq43 91.5 3e-13 >seq553 Length=498168 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 288263 GTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTT 288322 |||| | |||| |||||||| || ||||| || || || | ||| || | || || | Sbjct 350832 GTACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCT 350773 Query 288323 CTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCT 288382 | | |||||||| ||||| ||||||||||| ||| | || || ||||| || || | Sbjct 350772 CGAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTT 350713 Query 288383 GGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCT 288442 |||||||||| || || ||||| || | ||| | || || || |||||||| || | Sbjct 350712 GGATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTT 350653 Query 288443 TCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 |||| || || || || ||||| || |||||| ||| Sbjct 350652 TCCCCGTGAGGGTTTTCACGAAGATTTGCATTTTGT 350617 >seq17 Length=130260 Score = 102 bits (112), Expect = 2e-16 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 269170 CTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAG 269229 |||||| ||||| ||||||||||| || ||||| || |||| || || | ||| Sbjct 8963 CTCATGGCACAATACATCGAATTCGTTGCGGATCGGCTCCTCACATGTCTTGGCTCTGAC 9022 Query 269230 AAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAG 269289 || | | ||| | | ||||||||| | ||||||||| || || || ||| |||| || Sbjct 9023 AAGATTTTCAACGCTAGGAATCCCTTTGACTTTATGGACCTGATCTCTCTCCAAGGTAAA 9082 Query 269290 ACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG----AATCC 269345 || ||||||||||| ||||| ||| | ||||| ||| | || || ||| || | Sbjct 9083 ACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAAAAGGCCGGCGTGATGGTACAAAAC 9142 Query 269346 A--GAAGA-CAATATTTTTGCCATCGATGATGATTTTTAA 269382 | ||||| ||| | |||| | |||||| |||||| ||| Sbjct 9143 AAGGAAGAGCAACAGTTTT-CTCTCGATGCTGATTTCTAA 9181 >seq43 Length=112461 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || || |||||||| ||| | || || ||||| ||||||||||| Sbjct 60694 TGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATC 60753 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || ||||| ||||| || | ||| | || || || || || || || ||||| Sbjct 60754 TTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCT 60813 Query 288448 GTCAGAGTCTTGACGAATATCTGCATTATG 288477 || ||||||||||| || ||||||||| || Sbjct 60814 GTGAGAGTCTTGACAAAGATCTGCATTGTG 60843 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || || |||||||| ||| | || || ||||| |||||||| || Sbjct 60466 TGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATC 60525 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || ||||| ||||| || | ||| | || || || | ||||| ||||| || Sbjct 60526 TTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCA 60585 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||||||||| Sbjct 60586 GTCAGAGTCTTCACAAATATCTGCAT 60611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179641326111470