Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq35 111 2e-19 seq43 107 2e-18 seq553 104 2e-17 >seq35 Length=402807 Score = 111 bits (122), Expect = 2e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 154582 ACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTG 154641 |||| || ||||||||||| || || | || || | ||| |||| | ||| ||||| Sbjct 220535 ACACGGAGGCCAAGTTGCACACAGCGACCTCGTCGGGACTGGTGTACTCCACGATTTCGC 220476 Query 154642 CGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATG 154701 ||||| |||||| |||||||| | |||| ||||| ||| || || ||||||||| Sbjct 220475 AGCACAGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGTTGCTCTTCCTGTTGCATG 220416 Query 154702 CGTCTTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 |||| ||||||| ||||| |||||||| ||||| Sbjct 220415 CGTCCTTGTACATCATGTAGGGGGTGCCTGTTTC 220382 >seq43 Length=112461 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || || || || |||||||||||||| | | || | | || Sbjct 60400 AGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCC 60459 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| ||||||| |||||||| || |||||||| ||||| || || Sbjct 60460 TCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCC 60519 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| || | ||||| | || || || | || | ||| Sbjct 60520 TGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTC 60579 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||| || || || || ||||| Sbjct 60580 TTGCCAGTCAGAGTCTTCACAAATATCTGCAT 60611 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || || || || |||||||||||||| | | || | | || Sbjct 60628 AGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCC 60687 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| ||||||| |||||||| || |||||||| ||||| || || Sbjct 60688 TCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCC 60747 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| || | ||||| | || || || | ||| | ||| Sbjct 60748 TGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTT 60807 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | ||| || || || || |||||| Sbjct 60808 TTCCCTGTGAGAGTCTTGACAAAGATCTGCATT 60840 >seq553 Length=498168 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 ||| || || ||||||||||| | || ||| | | | || || ||||| || || || | Sbjct 350813 TTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTGTTTTCCAGCGAA 350754 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371 ||| || |||||||| || || ||||| ||||| || ||||| ||||| ||||||| Sbjct 350753 AATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTTCGCCTTTACATT 350694 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | ||||| | ||||| || | || | ||| || || || | ||||| || Sbjct 350693 TTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGTGAGGGTTTTCAC 350634 Query 64432 GAAAATTTGCATTTT 64446 ||| ||||||||||| Sbjct 350633 GAAGATTTGCATTTT 350619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639397590600