Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq43 113 4e-20 >seq43 Length=112461 Score = 113 bits (124), Expect = 4e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 |||||||| | ||||| ||| ||||| | | |||||||||| ||||||||||| || Sbjct 60385 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 60444 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | ||||| || || || |||| | | || |||||||| || || ||||| Sbjct 60445 AGTGTCCTGCCA-TCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGG 60503 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| || || ||| | |||| || | | ||| | ||| || | | ||| | Sbjct 60504 AATGCCTTCCTTATCC-TGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAA 60562 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | || || ||||||||||| || ||||| ||||||||| Sbjct 60563 CGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCATG 60612 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | |||||||| ||| ||||| | | |||||||||| ||||||||||| || Sbjct 60612 GCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA 60671 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || | || | ||||| || || || |||| | | || |||||||| || || |||| Sbjct 60672 AAGTGTCCTGCCA-TCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAG 60730 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || ||||| || || ||| ||| || | | ||| | ||| || | | ||| | Sbjct 60731 GAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAA 60790 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||||| || || ||||| || ||||| |||||||| Sbjct 60791 CATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 60839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257034162800