Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq553 98.7 7e-16 seq43 93.3 3e-14 >seq553 Length=498168 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || ||||||||||| ||| | ||| | || || Sbjct 350830 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 350771 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| |||||| | |||| |||||| || || ||||| ||||||||||| Sbjct 350770 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 350711 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| |||||| |||| || ||||| | || ||||| | || |||||||| Sbjct 350710 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 350651 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || || |||||||| || Sbjct 350650 CCCGTGAGGGTTTTCACGAAGATTTGCATTTT 350619 >seq43 Length=112461 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| | ||| | | ||| ||||||||||| || || || || ||||||||||| Sbjct 60611 TGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG 60670 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | || | || || | || ||||| || | || | |||||| || || | Sbjct 60671 AAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAG 60730 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||| |||||||| || || ||||| || ||| |||| || ||||| || Sbjct 60731 GAATGCCTTCCTTATCCTGGATCTTTGC-CTTCACATTTTCGATGGTATCTGATGGCTCA 60789 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||||||||||| ||||| ||||| || ||||| || ||||| Sbjct 60790 ACATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 60839 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||||||||| || || || || ||||||||||| || | || | || || Sbjct 60402 AACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTC 60461 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||| || | || | |||||| || || ||||| |||||||| || Sbjct 60462 CAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTG 60521 Query 15087 AAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| ||||| || ||| |||| || ||||| || ||||| || || || || | Sbjct 60522 AATCTTTGC-CTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCT 60580 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || |||||||| || ||||| || ||||| Sbjct 60581 TGCCAGTCAGAGTCTTCACAAATATCTGCAT 60611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357388232306525