Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq553 102 8e-17 seq43 100 3e-16 >seq553 Length=498168 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||||||||||||| | |||| ||||||||||| || || ||||| ||||| Sbjct 350777 ATCCTCGAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTT 350718 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||| ||| | | ||||| ||| |||| | ||| || || | || | Sbjct 350717 GTCTTGGATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGAT 350658 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || || ||||| || || || ||||| Sbjct 350657 GGTTTTCCCCGTGAGGGTTTTCACGAAGATTTGCAT 350622 >seq43 Length=112461 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || |||| |||| |||||||| | || ||||| || ||||| |||||||| Sbjct 60385 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 60444 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || ||||| || || || | || | ||||||||||| ||||| Sbjct 60445 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 60504 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||| ||| ||| | | || ||| | | ||||| ||| || | ||| || Sbjct 60505 ATGCCTTCCTTATCC-TGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAAC 60563 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| |||||||| || ||||| ||||||||| Sbjct 60564 GTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCATG 60612 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || |||| |||||||| | || ||||| || ||||| |||||||| Sbjct 60613 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 60672 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || ||||| || || || | || | ||||||||||| ||||| Sbjct 60673 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 60732 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| ||| ||| || ||| | | ||||| ||| || | ||| || Sbjct 60733 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 60792 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || ||||| || ||||| |||||||| Sbjct 60793 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 60839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495658647600