Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq43 161 2e-34 seq553 111 4e-19 >seq43 Length=112461 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || | || || || |||||||| || | |||||| |||| | || Sbjct 60390 TCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGT 60449 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||| ||||| ||||||||||| ||||| || |||||||||||||| || ||| ||| || Sbjct 60450 CCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCC 60509 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||||||| |||||| ||||| ||| |||| || || || ||||| Sbjct 60510 TTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAA 60569 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| |||||||| || || Sbjct 60570 TGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTG 60608 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || |||||||| || | |||||| |||| | ||||| ||||| ||||||||| Sbjct 60637 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGC 60696 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| || |||||||||||||| || ||| ||| ||||| ||||| |||||| Sbjct 60697 TTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTT 60756 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| ||||| ||| |||| || || ||||||| || || || || || ||| Sbjct 60757 GCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCTGTG 60816 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || Sbjct 60817 AGAGTCTTGACAAAGATCTG 60836 >seq553 Length=498168 Score = 111 bits (122), Expect = 4e-19 Identities = 151/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| ||||| |||| |||||| || | | ||||| ||||| || ||||| Sbjct 350825 GTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTG 350766 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||| ||||| || ||||||||||| || || ||| ||||| || || || || Sbjct 350765 TTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTT 350706 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || ||||| ||| || | | || || |||| |||||| || || ||||| Sbjct 350705 CGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGT 350646 Query 199606 GAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| |||||||| || ||||| |||||| Sbjct 350645 GAGGGTTTTCACGAAGATTTG---CATTTT 350619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178908534232955