Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq43 82.4 5e-11 >seq43 Length=112461 Score = 82.4 bits (90), Expect = 5e-11 Identities = 178/256 (70%), Gaps = 13/256 (5%) Strand=Plus/Plus Query 39471 ACAAATACATATCCAATCATCGCC-GCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTT 39529 ||| ||||| ||||| |||| ||| |||||| | |||||| |||||||| | || | Sbjct 60364 ACATATACA-ATCCA-TCATTGCCCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACT 60421 Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTT--CATCGTCCAATTGTTTCCCGCCAAA 39587 | || || || || ||||| | ||| | | |||| |||| || || ||| |||| Sbjct 60422 CCTTCTGAATGTTGTAATCAG--AAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAA 60479 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-AT 39644 ||| | |||||||||||| | || | |||||| || || | | | |||| || | || Sbjct 60480 AATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATC-CTGAATCTTTGCCTTCACAT 60538 Query 39645 CGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTT 39704 ||| | || |||| || |||||||| || ||||| || || || | ||| || Sbjct 60539 TTTCG--ATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTT 60596 Query 39705 TACGAAGATCTGCATG 39720 || || ||||||||| Sbjct 60597 CACAAATATCTGCATG 60612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347365937964545