Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10-
02] 865 sequences; 44,563,857 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq35 127 2e-23
seq598 107 1e-17
>seq35
Length=402807
Score = 127 bits (140), Expect = 2e-23
Identities = 378/580 (65%), Gaps = 11/580 (2%)
Strand=Plus/Plus
Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167
|||||| || ||||||||||| || || || || ||||||||||| | | ||
Sbjct 61085 ACATCAAATGTGCCACCACCCATGTCGAAGATGAGGACATTCATTTCACCCTGTCCCTTC 61144
Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227
|| || |||||||| || | || ||||| || || || ||||| || | | ||| ||
Sbjct 61145 TTGTCCAGACCATAGGCTATGGCTGCAGCCGTAGGCTCGTTAATGATACGAAGAACGTTC 61204
Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287
||||| ||||| | || || || || ||||| || | || |||||||| || |||||
Sbjct 61205 AGACCCGCAATAGTGCCGGCGTCCTTTGTGGCCTGGCGCTGAGAATCGTTGAAGTATGCC 61264
Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTC 518347
|| || ||||||||||| || | |||||||| |||| | | || ||| |||
Sbjct 61265 GGTACTGTAATAACGGCCTCCTTAACTTCTTTGCCAACGAACGACTCGGCAATTTCCTTC 61324
Query 518348 ATTTTACTTAAAATCATTGATGAAATTTGTTCTGG-GGAATATTGCTTGGATTCATTTTG 518406
|| || | | ||| | ||||||| || || ||| | | ||| | || |||
Sbjct 61325 ATCTTCACCAGCACCATGGCGGAAATTTCCTCCGGATGAAAAGT-CTTCGTAGCACCTTG 61383
Query 518407 ATATGATACTTCAAAATATGGTTTA------TTACCAACATTAATAACTTTAAATGGCCA 518460
|| ||||||| | ||| ||| | ||| | | | || | || |||||
Sbjct 61384 GTAGTTCACTTCAATAAGTGGCTTACCCCCGCTTCCAGCCT---TGACCGTGAACGGCCA 61440
Query 518461 GTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 518520
|| ||||| || || || || |||||| || | | ||||| | || || ||
Sbjct 61441 GTGCTTCATGTCCGACTGCACCGCGGGGTCATCGAACTTCCGTCCAATGAGACGCTTCGC 61500
Query 518521 ATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 518580
||||||| || || || || | || | || | ||| || || || || | |||
Sbjct 61501 GTCAAAAACGGTGTTTTCGGGGTTCCTCGCCACCTGGTTTTTCGCGGCGTCGCCCACCAG 61560
Query 518581 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 518640
| ||||| || || |||| ||||| || || || || | ||||| || || |||||
Sbjct 61561 TCGCTCTGTGTCGGTGAATGCGACATAGGAAGGGGTGGTTCTGTTACCCTGGTCGTTCGC 61620
Query 518641 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680
|| || || || | || | ||||||||| || |||
Sbjct 61621 TATGATCTCGACGCCTTCGTTCTTCCATACACCCACGCAA 61660
>seq598
Length=198622
Score = 107 bits (118), Expect = 1e-17
Identities = 114/149 (77%), Gaps = 1/149 (1%)
Strand=Plus/Minus
Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236
||||| |||| |||||| ||||| || ||||| | || | | |||||||| || ||
Sbjct 25387 CCATATGCAATAGCAGCCGCAGTGGGCTCATTGAGGATACGGATTACATTAAGCCCCGCG 25328
Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296
||| ||||| || || || ||||| | ||||| ||| || ||||||||||||||||||
Sbjct 25327 ATTGCGCCTGCGTCCTTTGTTGCTTGGCGTTGTGCATCATTGAAATATGCAGGAACAGTA 25268
Query 518297 ATAACGGCATCAGTTACTTCT-TTACCAA 518324
| ||| |||| |||||||| || ||||
Sbjct 25267 ACAACCGCATTTTTTACTTCTCTTCCCAA 25239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780779475850690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |