Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq553 138 3e-27 seq43 120 7e-22 >seq553 Length=498168 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||| || || || || |||||||| | || || |||||||| |||||||| Sbjct 350825 GTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTG 350766 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| || || || || || || || ||||||||||| |||||||| ||||| Sbjct 350765 TTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTT 350706 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || || ||||| |||||| ||||| || || || | || || || || Sbjct 350705 CGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGT 350646 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 | ||||| ||||| | |||||||| Sbjct 350645 GAGGGTTTTCACGAAGATTTGCATTT 350620 >seq43 Length=112461 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| || ||||| |||||||| | ||| || || ||||| || |||||| Sbjct 60637 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGC 60696 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || || || || || || |||||||||||||| || || || || ||| Sbjct 60697 TTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTT 60756 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || ||||| || || || || || || |||| || || ||||| Sbjct 60757 GCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCTGTG 60816 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||| || || || | |||||| Sbjct 60817 AGAGTCTTGACAAAGATCTGCATT 60840 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| || ||||| |||||||| | ||| || || ||||| || |||||| Sbjct 60409 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGC 60468 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || || || || || || |||||||||||||| || || ||||| ||| Sbjct 60469 TTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTT 60528 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || ||||| || || || || || | || | ||||| || ||| Sbjct 60529 GCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTC 60588 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || || || | ||||| Sbjct 60589 AGAGTCTTCACAAATATCTGCAT 60611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109469303823455