Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq35 138 9e-27 seq43 102 7e-16 seq598 95.1 1e-13 seq553 91.5 1e-12 >seq35 Length=402807 Score = 138 bits (152), Expect = 9e-27 Identities = 358/540 (66%), Gaps = 23/540 (4%) Strand=Plus/Minus Query 550010 GGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAAT 550069 || |||||||| ||| || ||||| ||| | || | || || || || || || Sbjct 61674 GGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCGAGATCATAGCGAAC 61615 Query 550070 GATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTT 550129 || || ||||||||||| || || || ||||| | ||||| || || || | | || Sbjct 61614 GACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACACAGAGCGACTGGTG 61555 Query 550130 GGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAA 550189 || || || || ||| | || | | | || || || || ||||||| || || Sbjct 61554 GGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCGTTTTTGACGCGAAG 61495 Query 550190 CGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCT 550249 ||| | |||||| | | || |||| | | || ||| | || |||||||| ||||| Sbjct 61494 CGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACATGAAGCACTGGCCG 61435 Query 550250 TTCCAAATTGTTAATGTTTCTGGAA---------AACCTTATATTGAAGCTACTCATGAA 550300 ||| | || || | |||||| | || |||||||| | | || Sbjct 61434 TTC---ACGGTCAAGG---CTGGAAGCGGGGGTAAGCCACTTATTGAAGTGAACTACCAA 61381 Query 550301 GGATCTGTTA--AACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAATGAAAATG 550357 || || || || | |||||| || || ||||||| | ||||| | |||| ||| Sbjct 61380 GG---TGCTACGAAGACTTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGAAGATG 61324 Query 550358 AAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACC 550416 || ||| ||| ||| | || ||||| ||||||||| ||| || || || || ||||| Sbjct 61323 AAGGAAATTGCCGAGT-CGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAGTACC 61265 Query 550417 AGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACT 550476 ||||| || || || || || || || || || || || || || |||||| || || Sbjct 61264 GGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGGGTCT 61205 Query 550477 TAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||||||||| || || || ||||| ||||| || | || ||||| || || || Sbjct 61204 GAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGGACAA 61145 Score = 95.1 bits (104), Expect = 1e-13 Identities = 205/307 (67%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 552283 TACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAG 552342 |||| || || | || |||| || | || || || ||||| || || || | ||||| Sbjct 60539 TACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTTGGAGACTGCTGGAG 60480 Query 552343 GTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTAT 552402 | | ||||| || | ||||| | || || || || || || || || | || | Sbjct 60479 GCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAAGAAGTCCCAGGTCT 60420 Query 552403 TTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAA 552462 | | || || |||| || || | | || |||||| | |||||||||||| | Sbjct 60419 TCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTTTGAAGGAGAACGTG 60360 Query 552463 AATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTC 552522 | || || ||||| || | | || | || | || || || || |||||||| | Sbjct 60359 CCATGACCAAGGATAACAACCTCTTGGGCAAGTTCCACTTGGATGGAATCCCTCCTGCCC 60300 Query 552523 CTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATG 552582 | ||||| || || ||||| ||||| || |||||||| ||||| ||||| || |||| | Sbjct 60299 CCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAAATGGCATCATGAACG 60240 Query 552583 TGACTGC 552589 | ||||| Sbjct 60239 TCACTGC 60233 >seq43 Length=112461 Score = 102 bits (112), Expect = 7e-16 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| | ||| || || | ||||||||| || || ||| |||||||||| || || Sbjct 60618 CCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGT 60677 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 || ||| || || || || ||||||||||| || | ||||||||||||||||| || Sbjct 60678 CCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCC 60737 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGA 563431 ||| ||||| || || ||| || || || || ||||| | || ||| || | Sbjct 60738 TTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA-TCCA 60796 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| || || ||||| || || || || ||||| Sbjct 60797 GAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 60839 Score = 95.1 bits (104), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | ||||||||| || || ||| |||||||||| || || || Sbjct 60394 AGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTG 60453 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || || || || ||||||||||| || | ||||||||||||||||| ||||| Sbjct 60454 CCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCC 60513 Query 563377 TTATCTTGAATTTTT 563391 ||||| ||||| ||| Sbjct 60514 TTATCCTGAATCTTT 60528 >seq598 Length=198622 Score = 95.1 bits (104), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 550387 AGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGC 550446 |||||| | |||| || | ||||| || |||||||| ||||| ||||||| ||||| Sbjct 25247 AGAAGTAAAAAATGCGGTTGTTACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGC 25306 Query 550447 TACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTAC 550506 || || || || || || || || |||||||| | ||||| ||||||| || || Sbjct 25307 AACAAAGGACGCAGGCGCAATCGCGGGGCTTAATGTAATCCGTATCCTCAATGAGCCCAC 25366 Query 550507 TGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||| ||||| ||||||||||| | || || Sbjct 25367 TGCGGCTGCTATTGCATATGGATTGGACAA 25396 >seq553 Length=498168 Score = 91.5 bits (100), Expect = 1e-12 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| ||||| || ||||| || || |||||||| | || || || ||| || | Sbjct 350828 CAAG-TGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGA 350770 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 | |||||||| || ||||| || | ||||||||||| ||||| ||||| || ||||| | Sbjct 350769 GCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGA 350710 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 |||| ||||| || || ||||| | | | || || || || | ||||| Sbjct 350709 TTTTCGCCTTTACATTTTCGATGGTATCCG-AAGGCTCCACGTCCAGCGTGATGGTTTTC 350651 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || ||||| ||||| |||||||| Sbjct 350650 CCCGTGAGGGTTTTCACGAAGATTTGCAT 350622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029250254898850