Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq35 437 1e-117 seq43 172 7e-38 seq553 165 1e-35 seq598 159 5e-34 >seq35 Length=402807 Score = 437 bits (484), Expect = 1e-117 Identities = 1053/1582 (67%), Gaps = 15/1582 (1%) Strand=Plus/Minus Query 195303 TTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAG 195362 |||| ||||| | || || || ||||| || || ||||||||| | || || | || | Sbjct 61688 TTGGCATCGACCTTGGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCG 61629 Query 195363 AGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATA 195422 |||| || |||| ||||| || ||| | || || || || || || || || || || | Sbjct 61628 AGATCATAGCGAACGACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACA 61569 Query 195423 ATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482 || || || || || || ||||| ||||| ||| || | |||||| || || | Sbjct 61568 CAGAGCGACTGGTGGGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCG 61509 Query 195483 TCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATA 195542 | ||||||||||||||||| ||||| || ||||| || || || || | Sbjct 61508 TTTTTGACGCGAAGCGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACA 61449 Query 195543 TAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602 | ||| ||||| | | || | || | | |||||| | ||| | || Sbjct 61448 TGAAGCACTGGCCGTTCACGGTCAAGGCTGGAAGCGGGGGTAAGCCACTTATTGAAGTGA 61389 Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 | | || |||| | ||| ||| ||| || |||||||| | |||||| || | | Sbjct 61388 ACTACCAAGGTGCTACGAAGACTTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGA 61329 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||||||||| | ||| || || ||| | || ||| || || || || ||| | || | Sbjct 61328 AGATGAAGGAAATTGCCGAGTCGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAG 61269 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 |||| || ||||||| ||||| || || ||||| ||||||||||| | ||||||||| Sbjct 61268 TACCGGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGG 61209 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 |||| ||| |||| | || || || || || || || || || || || |||||||||| Sbjct 61208 GTCTGAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGG 61149 Query 195843 ACAAGAACAAGGACGAAGATAAA--AATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 ||||||| |||| | ||| ||||| | ||||| || | |||||||| || || Sbjct 61148 ACAAGAAG--GGACAGGGTGAAATGAATGTCCTCATCTTCGACATGGGTGGTGGCACATT 61091 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||| || || || | || || | || || || || || |||||||| |||||||| Sbjct 61090 TGATGTTTCCCTGCTTACCATCGAGGACGGCATCTTTGAGGTCAAGGCTACAGCTGGTGA 61031 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-ATGAGT 196019 ||| ||| | ||||| || || ||||| | || | | | | || || | || | Sbjct 61030 TACCCATTTGGGTGGAGAGGACTTCGACAACAGACTCGTG-GACTTCTGCATGCAGGATT 60972 Query 196020 TCCGTCGAAAGAAT--AAGAAAG-ATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTA 196076 || || |||||| ||| ||| || || || || | ||||| | || || Sbjct 60971 TCAAGCGGAAGAATCGAAGCAAGGATCTTAGCGGCAACAGCCGTGCTCTAAGACGCCTGC 60912 Query 196077 GGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGA 196136 | ||| |||||| | || || || || ||||| | | || | | | |||| Sbjct 60911 GCACTCAATGTGAGAGAGCGAAGCGCACCCTCTCGAGCAGCACCCAGGCCACCATCGAGA 60852 Query 196137 TTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAG 196196 | |||||| ||||||| || ||||| | | | || || |||| |||||||| || | Sbjct 60851 TCGATTCGCTGTTTGAAGGCATTGATTATTCCGTATCTCTTTCCCGGGCACGTTTCGAGG 60792 Query 196197 AGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACG 196256 || | | |||| || |||| | | | | || || || | || | |||| Sbjct 60791 AGCTCTGCATGGATTACTTCAGGAGTTCTCTTGTGCCAGTGGAGAAGGTGTTGAAGGACG 60732 Query 196257 CAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTC 196316 | || || ||| | || | || ||||| | || ||||| || |||||||||| Sbjct 60731 CTGCCATCGACAAGCGCAGTGTGCACGAGGTTGTCTTGGTCGGAGGGTCTACCCGTATTC 60672 Query 196317 CGAAGATTCAACAGATGCTTTCTAGC--TTCTTCAATAATAAAGATTTAAACAAAACGAT 196374 | |||||||| ||||| | || || ||||||||| | || || | | || Sbjct 60671 CCAAGATTCAGCAGAT--TATCCAGGAGTTCTTCAATGACAAGGAGCCCTGCCGTTCCAT 60614 Query 196375 CAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGT 196434 |||||||||||| || || || || ||||| || || ||||| || |||||| ||||| Sbjct 60613 CAACCCGGATGAGGCCGTGGCATACGGTGCTGCAGTGCAGGCCGCCATTCTCAAGGGTGT 60554 Query 196435 TGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCT 196494 |||| | | || || ||||||||||| || || || || || | || || || | Sbjct 60553 CAACAACTCTCAGGTACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTT 60494 Query 196495 TGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAA 196554 || || || || || || ||||| || | || || | ||||| || || || || || Sbjct 60493 GGAGACTGCTGGAGGCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAA 60434 Query 196555 GAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATA 196614 |||| || ||||| | || || | || || || ||||| || |||||||| | Sbjct 60433 GAAGTCCCAGGTCTTCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTT 60374 Query 196615 TGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGG 196673 |||||||||||| | || || | ||||||||| | || | || | ||| | ||| | Sbjct 60373 TGAAGGAGAACG-TGCCATGACCAAGGATAACAACCTCTTGGGCAAGTTCCACTTGGATG 60315 Query 196674 GGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAA 196733 | || || |||| ||| | || || || || || | || ||||||||| || |||| Sbjct 60314 GAATCCCTCCTGCCCCCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAA 60255 Query 196734 ATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGA 196793 |||| || | |||||||| || || ||| |||| ||||| | |||| || Sbjct 60254 ATGGCATCATGAACGTCACTGCCACCGAAAAGAACACTGGGAAATCCAACCAGATCACGA 60195 Query 196794 TTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGG 196853 |||| || || ||||| || || || || ||||| || || ||||| ||| || | Sbjct 60194 TTACGAACGATAAGGGCCGCCTGTCACAGAGTGAAATCGACCGCATGGTGGCAGAAGCTG 60135 Query 196854 AAAAGTACAGGGAAGAAGACGA 196875 | ||||||| || || ||||| Sbjct 60134 AGAAGTACAAGGCGGAGGACGA 60113 >seq43 Length=112461 Score = 172 bits (190), Expect = 7e-38 Identities = 178/232 (77%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || || ||||| || || ||||| | || |||||| | ||| Sbjct 60611 ATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 60552 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || |||||||| ||||||||||||||||| || |||||| Sbjct 60551 GATACCATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 60492 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || |||||||| || || ||||| || ||||| | || || ||||||||||| Sbjct 60491 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAAC 60432 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGCAA 172093 |||| |||||||| || || || | ||||| | || || || || |||| Sbjct 60431 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTCTACGAGGCGG-GCAA 60381 Score = 167 bits (184), Expect = 3e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || || || || || ||||| || || || || |||||| | ||| Sbjct 60839 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATCA 60780 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || ||||| || ||||||||||||||||| || |||||| Sbjct 60779 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 60720 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || |||||||| || || ||||| || ||||| | || || ||||||||||| Sbjct 60719 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAAC 60660 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| |||||||| || || || | ||||| Sbjct 60659 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCT 60628 >seq553 Length=498168 Score = 165 bits (182), Expect = 1e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||||||||| || || ||||| ||||| || || || ||| | || Sbjct 350622 ATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCTTCG 350681 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || || || ||||| |||||||||||||| || |||||| Sbjct 350682 GATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGATCAG 350741 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| |||||||| || ||||| | |||||| | ||||||||| Sbjct 350742 CAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTACAAC 350801 Query 172042 GTTCAAAAGGAGTCTACTCTACAC 172065 | || ||||| ||||| ||| Sbjct 350802 ATCCAGAAGGAAAGCACTCTTCAC 350825 >seq598 Length=198622 Score = 159 bits (176), Expect = 5e-34 Identities = 408/612 (67%), Gaps = 17/612 (3%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 ||||| || ||| | || || |||||||| ||||| || || | | | | | || Sbjct 24855 ATTGGCATTGATCTCGGTACCACTTACTCGTGTGTGGGGGTGTACCGCCACGGAAGAGTT 24914 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || ||||| |||||||||||||||||||| | ||||| ||||| | ||| | ||| Sbjct 24915 GATATTATTCCGAATGACCAAGGAAACCGCATTACTCCTAGCTACGTGTCTTTTTCCGAT 24974 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 ||||| | | || || || || || || | |||| ||||| ||||| Sbjct 24975 GATGAAAGGAAAATCGGGGAGGCTGCCAAGAACGACGCAGCCGATAACCCGTCAAATACC 25034 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGAT 195541 | || |||| |||||| || || || ||| || || |||| ||| ||| Sbjct 25035 ATTTTCGACGTGAAGCGCCTCATGGGGCGCCGTTTCAACGAGCCACAAGTGCAATCCGAC 25094 Query 195542 ATAAAGGACTGGT--CTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATG 195599 || || |||| | ||||||| | || | | || ||||| |||| | Sbjct 25095 ATGAA--ACTGCTGCCTTATGAGATCATTAA---TAAAGATGGAAAGCCCTACATTAGAG 25149 Query 195600 TTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGA 195659 | | |||| || | |||| | ||||||| || || | || | ||||||||| Sbjct 25150 TCAATGTTCAGGGCCAACAGAAGGAGCTTGCTCCAGAGGAGGTGTCTGCCATGGTGTTGG 25209 Query 195660 TTAAGATGAAGGAGACTGCGGA-ATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 ||||||||| | || || | || | |||| | | || ||| |||| ||||| Sbjct 25210 GCAAGATGAAGCAAGTGGCCGAGAACTATT-TGGGAAGAGAAGTAAAAAATGCGGTTGTT 25268 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| ||||| || |||| |||| ||||||| || || ||||||||||| | || || Sbjct 25269 ACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGCAACAAAGGACGCAGGCGCAATC 25328 Query 195779 GCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 ||||| || || ||| | | || ||||||| || || |||||||| ||||| ||||| Sbjct 25329 GCGGGGCTTAA-TGTAATCCGTATCCTCAATGAGCCCACTGCGGCTGCTATTGCATATGG 25387 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 |||||||| |||||| || || | | ||| ||| ||||| ||||||||||| Sbjct 25388 ATTGGACAAG---AAGGAC---GAGAAGACCATTTTGGTCTACGATCTTGGTGGTGGTAC 25441 Query 195898 GTTTGATGTCTC 195909 || |||||||| Sbjct 25442 CTTCGATGTCTC 25453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657855286862800