Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq553 107 1e-18 seq43 104 2e-17 >seq553 Length=498168 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||||| |||||||| ||||| || ||||| ||| | | | |||| || Sbjct 350830 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 350771 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || ||||| ||||| ||||| || ||||| || |||| | || |||||||| | Sbjct 350770 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 350711 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 ||||| || || | | || | || | ||| || || | || ||||| || Sbjct 350710 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 350651 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||||| || || ||||| ||||| Sbjct 350650 CCCGTGAGGGTTTTCACGAAGATTTGCAT 350622 >seq43 Length=112461 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | ||| |||| |||| ||| ||||||||||||||| || || || Sbjct 60613 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 60672 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | |||| ||||| ||||| ||||| || || || || ||||| || | || Sbjct 60673 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 60732 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || ||| || || | | || | || | ||| ||| Sbjct 60733 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 60792 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || ||||| || || ||||| ||||| |||||||||||||| Sbjct 60793 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 60839 Score = 86.0 bits (94), Expect = 4e-12 Identities = 175/255 (69%), Gaps = 5/255 (2%) Strand=Plus/Plus Query 34726 GGTACATATGCATATCCAATCATTTCCTCCCCTC--AACCTCAGGACCAGGTGAATGGTG 34783 || |||||| || ||||| ||||| || | |||| | | ||| |||| |||| ||| Sbjct 60361 GGGACATATACA-ATCCA-TCATTGCC-CGCCTCGTAGACGCAGAACCAAATGAAGGGTT 60417 Query 34784 CTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCG 34843 ||||||||||||||| || || || || | | |||| ||||| ||||| ||||| Sbjct 60418 GACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCA 60477 Query 34844 AAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG 34903 || || || || ||||| || | || | || ||||| || | || ||| || || Sbjct 60478 AAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACA 60537 Query 34904 GATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | | || | || | ||| || || | || || ||||| || || || ||||| Sbjct 60538 TTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTC 60597 Query 34964 ACAAAGATCTGCATG 34978 ||||| ||||||||| Sbjct 60598 ACAAATATCTGCATG 60612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689366485435