Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq35 127 2e-23 seq598 116 3e-20 >seq35 Length=402807 Score = 127 bits (140), Expect = 2e-23 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 ||||||| || ||||||||||| || || || || ||||||||||| | | || Sbjct 61084 AACATCAAATGTGCCACCACCCATGTCGAAGATGAGGACATTCATTTCACCCTGTCCCTT 61143 Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 || || |||||||| || | || ||||| || || || ||||| || | | ||| || Sbjct 61144 CTTGTCCAGACCATAGGCTATGGCTGCAGCCGTAGGCTCGTTAATGATACGAAGAACGTT 61203 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||||| ||||| | || || || || ||||| || | || |||||||| || ||||| Sbjct 61204 CAGACCCGCAATAGTGCCGGCGTCCTTTGTGGCCTGGCGCTGAGAATCGTTGAAGTATGC 61263 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAA 282491 || || ||||||||||| || | |||||||| |||| Sbjct 61264 CGGTACTGTAATAACGGCCTCCTTAACTTCTTTGCCAA 61301 >seq598 Length=198622 Score = 116 bits (128), Expect = 3e-20 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| |||||| ||||| || ||||| | || | | |||||||| || || Sbjct 25387 CCATATGCAATAGCAGCCGCAGTGGGCTCATTGAGGATACGGATTACATTAAGCCCCGCG 25328 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| ||||| || || || ||||| | ||||| ||| || |||||||||||||||||| Sbjct 25327 ATTGCGCCTGCGTCCTTTGTTGCTTGGCGTTGTGCATCATTGAAATATGCAGGAACAGTA 25268 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 | ||| |||| | |||||||| |||| | ||| Sbjct 25267 ACAACCGCATTTTTTACTTCTCTTCCCAAATA 25236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740587932155490