Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq553 114 8e-21 seq43 104 2e-17 >seq553 Length=498168 Score = 114 bits (126), Expect = 8e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||||| || || || ||||||||||| ||||| || | | || || Sbjct 350830 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 350771 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||||| || ||||||| |||||||||||| |||| | ||||| ||||| Sbjct 350770 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 350711 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 |||||| | | |||| || | ||| || | |||||||| | |||||| ||||| Sbjct 350710 ATTTTC-GCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTT 350652 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || ||||| ||||| Sbjct 350651 CCCCGTGAGGGTTTTCACGAAGATTTGCAT 350622 >seq43 Length=112461 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||||||| | |||||||| || || ||| || || ||||||||||| || Sbjct 60613 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 60672 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || |||| || || ||||||||||| | |||||||||||| | || Sbjct 60673 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 60732 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || || | |||| || | ||| || || || || Sbjct 60733 ATGCCTTCCTTATCCTGGATCTT-TGCCTTCACATTTTCGATGGTATCTGATGGCTCAAC 60791 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | || || ||||| ||||| | || || |||||||||||||| || Sbjct 60792 ATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATTGT 60842 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||||||| || || ||| || || ||||||||||| || Sbjct 60385 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 60444 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || |||| || || ||||||||||| | |||||||||||| | || Sbjct 60445 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 60504 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||| || || | |||| || | ||| || || || || Sbjct 60505 ATGCCTTCCTTATCCTGAATCTT-TGCCTTCACATTTTCGATGGTATCTGATGGCTCAAC 60563 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | ||||| || || || || | || || ||||| |||||||| Sbjct 60564 GTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 60611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328700534740800