Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq687 93.3 1e-15 seq69 93.3 1e-15 seq46 91.5 5e-15 >seq687 Length=187023 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 4/72 (6%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 14355 GCTGA--TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 14412 Query 2829 CCGGGCTTCAGC 2840 ||||| ||||| Sbjct 14413 CCGGG--TCAGC 14422 >seq69 Length=95429 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 4/72 (6%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 56235 GCTGA--TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 56292 Query 2829 CCGGGCTTCAGC 2840 ||||| ||||| Sbjct 56293 CCGGG--TCAGC 56302 >seq46 Length=399859 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 11628 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 11685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849450047925