Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_027125.1 Length=47142 Score E Sequences producing significant alignments: (Bits) Value seq818 275 2e-69 seq536 183 9e-42 seq715 141 3e-29 seq839 131 5e-26 seq759 105 2e-18 >seq818 Length=553 Score = 275 bits (304), Expect = 2e-69 Identities = 385/532 (72%), Gaps = 11/532 (2%) Strand=Plus/Plus Query 16023 AATTAATTTTTAATACTTAAAAAA-TATGGGTACAATTTCGACAGCAGCCGGTTTAGACC 16081 ||||||||||||||| |||||||| |||||| |||||||| || || | |||| || Sbjct 8 AATTAATTTTTAATAATTAAAAAAATATGGGGACAATTTCCACTGCCGTTGGTTCTGATA 67 Query 16082 GTAGATCAAGAGGAAGTGGTGTAAAAC-TCAAAAAAGGGTTTTTCAATAATGATACTCCA 16140 | | ||||| || |||||| || ||| | |||||||| ||||||| || ||| || ||| Sbjct 68 GAATATCAATAGTAAGTGGC-TACAACATTAAAAAAGGTTTTTTCAGTACTGAAACGCCA 126 Query 16141 AATTTACCTCAAAAGATTGCTATTTTTGGCGAAGCAAATACAGCTAATCAATCAGGATTA 16200 |||||||| || | ||||| ||||||| |||||||||||| | |||||| ||||| Sbjct 127 AATTTACCACAGATTATTGCGGTTTTTGGAGAAGCAAATACATCAAATCAAAGTGGATTG 186 Query 16201 ACAGTAA--CACCAGTTGAGGTAACAAGTGCTAATGAAGCAGCTCAATTATTTGGATATG 16258 | ||| || | ||||| || |||||| | ||||||| | ||| ||||| |||| Sbjct 187 A--GTACTGCAAAAAGAGAGGTTACGAGTGCTGACGAAGCAGGTAGATTGTTTGGGTATG 244 Query 16259 GCTCACCAATTCACTCAATAATGAGAATTTTAAGACCTGTTAACGGT--GATGGTGTGGG 16316 | || ||||| ||| | ||| |||||| | || || ||| ||||| || || Sbjct 245 GTTCGCCAATACACAGACAAATTTCTATTTTACGTCCAA--AAGGGTCTGATGGCGTAGG 302 Query 16317 TGGAATTCCTACTATTGTTTTTCCTCAAATTACAGATGGCGGGGCAACTGCAACATCTAG 16376 ||| ||||||| || |||||||| ||||||| || | || ||||||||| | || Sbjct 303 AGGAGTTCCTACAATCGTTTTTCCACAAATTAGTTCGGGTAGTGCTACTGCAACAGCAAG 362 Query 16377 AACTTGGACAGTTACGGGAACGGCAACAAGCAACGCTACACATTATGTAATTGTTAACGG 16436 | || ||||| ||||||||||||| ||| ||||||||| | | ||||| || Sbjct 363 AGTTTTCACAGTAGTTGGAACGGCAACAAAAAACACTACACATTCATTGGTAGTTAATGG 422 Query 16437 TCGTGATAACGTAGATTTTCAATCTTACGCTTATTCTGTTATTACAGGAGATACACCGAC 16496 |||| | | |||| ||| || |||| ||||| ||| ||| |||||| | || Sbjct 423 TCGTTACGATTTAGACTTTAAACCTTATTCTTATGATGTAGCAGTAGGCGATACAGCTAC 482 Query 16497 AATAATTGCGGGAAAAATTAAAGATGCTATTAATGGCGTTTTAGGCGCACCA 16548 | ||||| ||||| || |||||||| ||||| | |||||||| || ||| Sbjct 483 TGTTATTGCAGGAAAGATGAAAGATGCAATTAACGCTGTTTTAGGTGCGCCA 534 >seq536 Length=2088 Score = 183 bits (202), Expect = 9e-42 Identities = 216/291 (74%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 38028 ATTGATTTTCAAAAATTGATTGCTTACTACAACAAAATATTAAATAAAAGTTGTAGAGTT 38087 ||||||||| ||||| | || ||||||||| ||| | ||| |||||||||||||||| Sbjct 360 ATTGATTTTGAAAAACTTATGATTTACTACAATAAAGTTTTAGATAAAAGTTGTAGAGTG 419 Query 38088 ATTCCAGataaagcaaaaaagcaattcaatcaaagaataaaagagggttataaaaaagag 38147 ||| | | || |||| | | || | ||||||| ||||||| || ||| ||| | Sbjct 420 ATTTCTAAAAAGGCAAGGGATAATTTTATTCAAAGACTAAAAGAAGGCTATTTAAAGGGC 479 Query 38148 gatattcaaaaagTAATAGATAATGCTTCAAATGATTCTTTTCATAAAGATAATAATTAT 38207 |||||| ||||||||||||||||| ||| || || |||||||||||| | |||| Sbjct 480 GATATTGTAAAAGTAATAGATAATGTTTCTAACGACAATTTTCATAAAGAAACGGGTTAT 539 Query 38208 AAGCATTTGACTTTAGAATTCCTTTCAAGACCTGATAAATTTGAACGTTATGCTAGTATG 38267 || || | || ||||| || | ||||||||| | | |||||| | ||| || ||| Sbjct 540 AAACACGTTACATTAGAGTTTTTGTCAAGACCTCAAATTTTTGAAAGATATTCTTCAATG 599 Query 38268 CAACATAAAAAACCAAT-----AGATAAAGGA-GGTTTTACAAATCATTAA 38312 |||||||||||||||| | ||||| || | |||||||||||| ||| Sbjct 600 GAACATAAAAAACCAATTAGCCAAATAAAAGATGTTTTTACAAATCAATAA 650 Score = 179 bits (198), Expect = 1e-40 Identities = 298/421 (71%), Gaps = 17/421 (4%) Strand=Plus/Plus Query 38386 ATGGTTTAACAATT-ATTAAATAACTATGATT---CCAAAAGGATTTGAAATATTAACGG 38441 ||| ||| |||| | | |||| |||||||| | ||| |||||||||| | |||| | Sbjct 631 ATGTTTTTACAAATCAATAAAAAACTATGAATTTACCACAAGGATTTGAGCTTTTAA--G 688 Query 38442 CTTCACAAAATCACGATAGTATGATTAA-----ATATCGCGAAAAAGGAGCTTTACGAGG 38496 || ||||| ||| | || |||||| | |||| | ||||||||||| ||| | || Sbjct 689 CTAT-CAAAA-CACAAGAG-ATGATTTACAGCAATATAGAGAAAAAGGAGCGTTAAGGGG 745 Query 38497 TGTTTATTTAGGTTTTCCAAATTTGAATGAGTTTTATACTATGGCTTTACCAGGTGTTAC 38556 || | |||||| ||||| | | || || || ||||| | || || | || Sbjct 746 AGTCTTTTTAGGATTTCCTTTCCTTGACGAACACTACACAATGGCGCTTCCTGGAATAAC 805 Query 38557 TGATTGGACTGGTTACCCCCAAAGTGGTAAAACCGAATTGTTAATCGAATTGCTTTTAAA 38616 |||| |||||||| || |||||||| ||||| ||||| |||| ||||| |||||||| Sbjct 806 TGATATTACTGGTTATCCTCAAAGTGGAAAAACAGAATTTCTAATTGAATTACTTTTAAA 865 Query 38617 CACTTCATTATTTTACGGTTGGAAACATTTATTGTACGTTCCTGATATTGGAAGTAAAGA 38676 |||||| | || || || ||||| |||||| | ||||| |||||| ||||| |||| | Sbjct 866 CACTTCTCTTTTCTATGGATGGAAGCATTTACTTTACGTGCCTGATGTTGGAGATAAAAA 925 Query 38677 AGATATGATTTCTTTAGTTATTCATAAAATAACTGGTAAAACATTTGATAAGCGTTATAA 38736 || || | | | ||||||||| ||| ||| |||||||||||| | ||| | Sbjct 926 TGAGATTTTGGCAAACTTAATTCATAAATTAAGTGGATTAACATTTGATAAAAGATAT-A 984 Query 38737 GTCAAATTACATTGAAGAAAGTGATATTAGTAAAAATATTGATTGGGTTTTAGAGCATTT 38796 || ||| | ||| ||||| |||| || |||||| | | ||| | ||||| ||||| Sbjct 985 GT--AATCATATTTCAGAAAATGATGTTGATAAAAACTTACAATGGATATTAGAACATTT 1042 Query 38797 T 38797 | Sbjct 1043 T 1043 >seq715 Length=827 Score = 141 bits (156), Expect = 3e-29 Identities = 134/170 (79%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 41708 GCTGGTAGAATTGGATTTTACGACGATTACGCAAGGGAAAATAATATTCCTTTACTAATT 41767 ||||| |||| || ||||||||| | | || || || ||||||||||| ||| || | Sbjct 578 GCTGGGAGAAAAGGTTTTTACGACCAATGGGCGAGAGATAATAATATTCCGTTATTAGTA 637 Query 41768 GATAAAAGATTCTTAAGAGCCTGTTGTTTAGTACATAATGGAGAGTTAGAAACAAATCCA 41827 ||||||||||| ||| |||||||||||| ||| |||||||||||||||| |||||| Sbjct 638 GATAAAAGATTTCTAAAAGCCTGTTGTTTGCAACACAATGGAGAGTTAGAAAATAATCCA 697 Query 41828 GAGTTATCaaaaaaaTATCAATACAGTCGGGTTAGTGG--TaaaaaaaaG 41875 || ||||||||| || ||||||| ||| ||| ||| | |||||||| Sbjct 698 GAATTATCAAAACAACATCAATATAGTAAAGTTTCTGGAATTAAAAAAAG 747 >seq839 Length=515 Score = 131 bits (144), Expect = 5e-26 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42074 GAGGTAAAAGATTTAGGAATAAATCAGGTAATAAATTTTAGTGTTGCCGTATCTGAAAGT 42133 || |||||||||||||| |||||| || || ||||||||||| || | || |||| | Sbjct 459 GAAGTAAAAGATTTAGGGCAAAATCAAGTTATTAATTTTAGTGTAGCTCTTTCGGAAACT 400 Query 42134 TATGTAAACAAAACTACTAATGAAAAGATAACTAATACAACATGGTACGAATGCGCTAAA 42193 |||||||||||||| || || |||||| | || |||||||| ||||| || || || || Sbjct 399 TATGTAAACAAAACCACAAACGAAAAGGTTACGAATACAACTTGGTATGAGTGTGCAAAG 340 Query 42194 TGGGGGAACAATACGCAAATAGCTCAGTATTTGAAAAAAGGACAACAAGTCTATATAATG 42253 ||||| || | || || || || || || |||||||| |||||| | | | Sbjct 339 TGGGGAAATAGCACCGCTATTGCACAATACTTAAAAAAAGGCACACAAGTATTAGTTGAG 280 Query 42254 GGTAAGCCCAATAATAGAGCTTGGCAAAATGA 42285 || || || | | |||||| |||||||| || Sbjct 279 GGAAAACCTATTGCTAGAGCGTGGCAAAAAGA 248 >seq759 Length=706 Score = 105 bits (116), Expect = 2e-18 Identities = 191/278 (69%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 13682 AGTTACTTTAGATACGGTTGTAGGTACAACTGGAAAATGTTTAAGAGATTTTTTAACTGA 13741 |||||||||||| || ||||||||| | |||| |||| |||| | ||||| | Sbjct 230 AGTTACTTTAGACACAGTTGTAGGTTC------AAAAACATTAAAAGATATATTAACAGC 283 Query 13742 TTTAGGTTTCGTTCTTAAAAACGTAACTGAAAATTCTAATTTTGATAATTAATCATGGCA 13801 ||||| |||||| | || ||||| || || ||||| || |||||||||| |||||| Sbjct 284 ATTAGGGTTCGTTTTAAACAACGTTACCGAGCTATCTAAATTCGATAATTAATTATGGCA 343 Query 13802 ATT--AGTTTATTACAACATAGCGAAAAGCTAACAAAAAAGGTAGTAGGTACATTTGATG 13859 ||| | || | | |||| || |||| ||||| | || |||| |||||| | Sbjct 344 ATTTCAATTCA--AGAACACAGTAGTTTATTAACTAAAAAAATTGTTGGTAAATTTGAAG 401 Query 13860 AAATGATACCTGTTAGAGCTGGTTTTTCGGAATTTTTCCCAAGAGAGACTACTCCGAGTT 13919 ||| ||||| |||||| | || || | | | || ||| ||| || || || | || Sbjct 402 AAACAATACCAGTTAGAACGGGATTCGCTGGGTGGTTTCCAGAAGAAACAACACCTACTT 461 Query 13920 TAGAAATTGACGTAGAAGTACAGCGTGACAATGATTTA 13957 ||| | || || || || || | ||||| |||||| Sbjct 462 ATGAAGTAGATGTTGAGGTTCAAAGAGACAACGATTTA 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150731251691520