Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq35 102 9e-17 seq24 89.7 6e-13 >seq35 Length=402807 Score = 102 bits (112), Expect = 9e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 53513 GTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTC 53572 ||||||||| || | | || |||||| |||| || || || ||||||||||| | Sbjct 219752 GTCTTCAACGACGCCTCTCGCTACGTCGACCAAGGCGGCGGCAAGCGCAAGGGCAGCCTT 219811 Query 53573 GCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAAT 53632 || | ||| | ||||| ||||| | ||||| | |||||||| || | || ||| Sbjct 219812 GCAGTGTACGTGGAGCCCTGGCATTCAGACATCTTCGAGTTTCTGGATATCCGAAAAAAT 219871 Query 53633 CAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTC 53692 || || | || ||||||||| | | ||||| ||| | || |||||| ||||||||||| Sbjct 219872 CATGGGAAGGAGGAGATGCGCGCCAGGGACCTCTTTCCGGCCCTGTGGGTTCCGGACCTC 219931 Query 53693 TTCATG 53698 || ||| Sbjct 219932 TTTATG 219937 Score = 86.0 bits (94), Expect = 7e-12 Identities = 156/228 (68%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 55699 CGTCCAGAATCTGG---AGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGA 55755 ||| ||| |||||| ||||||| ||| |||||| |||| || ||||| ||||| Sbjct 221540 CGTGCAGCATCTGGCAGAGATTCCGGACGATCTAAAGGAGCTTTATCGCACGGTTTGGGA 221599 Query 55756 GATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTC 55815 ||| ||| || | |||| ||| | ||||| | | | | | |||||||| Sbjct 221600 GATAAAGCAGCGCAGCATTGTTGATATGGCGGTAGATCGCGCGCCCTTCGTAGACCAGTC 221659 Query 55816 CCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTT 55875 ||||||| | || ||| |||| |||||| | | || ||| | |||||||||| Sbjct 221660 CCAGTCTTTAAATATCCACATGCGGAATCCCACTTTCGCGAAGCTCTCGACGATGCACTT 221719 Query 55876 TTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| |||||| |||||||||||||| || |||||| | |||| Sbjct 221720 CCACGCGTGGAATTCCGGACTCAAGACGGGCATTTACTATTTAAGGAC 221767 >seq24 Length=407421 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| |||| | ||||||||| || || | | | ||| ||||| Sbjct 241092 GTAAAGATGTAGCGGGGTGCAGACGCATCCTTCCCGCCCTCTTTTCTGGATCCGAACTGA 241151 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||||| |||| || || |||||| || ||||| ||| |||| | | Sbjct 241152 CCAACGGGCTCAAGGAAATTAAGATTGTTGCTTCCAACGAACCGCTGGGCCATGGTAATG 241211 Query 152149 ATCGTGCCCTGCA--GACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 || || ||||| |||| ||| | |||||||||||||| ||||||| || | || | Sbjct 241212 ATGGTTTGCTGCAAAGACT-GCT-CGCCGTGGTGATACGCACTCTGCTCGGCAACATACC 241269 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTG-AGACAGGCGTAAATC 152265 | | | ||||||||||||| || | | || |||||||||| |||| ||| | | | Sbjct 241270 CAGAGAGTTGCGCCACCTTCAGCTCGGCCTTCGTGTTCTTCTTGAAGAC-GGCAAACAGC 241328 Query 152266 ACCTTGCGCTG 152276 || |||||||| Sbjct 241329 ACTTTGCGCTG 241339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547210083227000