Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq43 163 3e-35 seq553 138 1e-27 seq35 107 2e-18 seq24 95.1 1e-14 >seq43 Length=112461 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || || || |||||||| || |||||| || Sbjct 60840 AATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATC 60781 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| ||||||| || || ||||| ||||| || |||||||| || || Sbjct 60780 AGATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 60721 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| |||||||| || ||||| || ||||||| | || || | || || || Sbjct 60720 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAA 60661 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||| | || ||||| | | ||||| Sbjct 60660 CATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 60613 Score = 159 bits (176), Expect = 4e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || || | || |||||| || Sbjct 60611 ATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 60552 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| ||||||| || |||||||| ||||| || |||||||| || ||| Sbjct 60551 GATACCATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 60492 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || ||||| || ||||||| | || || | || || || Sbjct 60491 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAAC 60432 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | || ||||| || || |||||| | || ||||||| || || || ||| Sbjct 60431 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTCTACGAGGCGGGCAA 60381 >seq553 Length=498168 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || || || || || || || || || || || ||| | Sbjct 350621 AATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCTTC 350680 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| | ||||| ||||| || |||||||| || ||||| || || || Sbjct 350681 GGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGATCA 350740 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||| ||||| || || |||||||||| | ||||| | || || || Sbjct 350741 GCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTACAA 350800 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||| |||||| ||||||||| Sbjct 350801 CATCCAGAAGGAAAGCACTCTTCA 350824 >seq35 Length=402807 Score = 107 bits (118), Expect = 2e-18 Identities = 244/362 (67%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGC 80783 || || || || || || || | | |||| |||||||| ||| ||| | | || ||| Sbjct 220719 TCCGCGAGCCCTTGCACACCCAAGCCGATGGGGCGGTGTCGCAGGTTGCTGTAGCG-GGC 220661 Query 80784 CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCG 80843 || || | ||||| | || |||||||||| |||||||| || || || | ||| Sbjct 220660 TTCTGGGACGGGGTAGTAATTTCTATCGATGACACGGTTCAGATTCCGAGTCATGACCTT 220601 Query 80844 TGTAACATC-ATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACA------AATGCCG 80896 |||| | |||| | ||| |||||||| | ||| || ||| ||| | Sbjct 220600 CACAACAGCCATGA-GCTTCGCGAAGTCGAAGAGCTTCTTCTCGACATCCACGAATCGAG 220542 Query 80897 GAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGA 80956 | || || ||| |||| |||||||| || ||||| || | | || |||| |||| Sbjct 220541 GGAGAGACACGGAGGCCAAGTTGCACACAGCGACCTCGTCGGGACTGGTGTACTCCACGA 220482 Query 80957 TTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGT 81016 |||| ||||| |||| || ||| | |||| ||||| |||||| ||| || Sbjct 220481 TTTCGCAGCACAGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGTTGCTCTTCCTGT 220422 Query 81017 TGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGG 81076 |||| ||||||||||| |||||| ||||| || || |||| ||| || | ||||| | Sbjct 220421 TGCATGCGTCCTTGTACATCATGTAGGGGGTGCCTGTTTCGATCTGCGATTGCAGGATAG 220362 Query 81077 CG 81078 || Sbjct 220361 CG 220360 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/242 (69%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| |||||| | |||||| |||||||||||||| || ||||| ||| | |||| Sbjct 221773 GCCTGCGTCCTTAAATAGTAAATGCCCGTCTTGAGTCCGGAATTCCACGCGTGGAAGTGC 221714 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || | ||||||||| | ||||| ||| |||| ||| || | |||||| ||||| Sbjct 221713 ATCGTCGAGAGCTTCGCGAAAGTGGGATTCCGCATGTGGATATTTAAAGACTGGGACTGG 221654 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT--TG-ACTTTTGTGGAATTTCC 80208 | ||| | | | |||||| ||||||| |||| ||| || || | | || ||| Sbjct 221653 TCTACGAAGGGCGCGCGATCTACCGCCATATCAACAATGCTGCGCTGCTTT---ATCTCC 221597 Query 80209 CATACTGTACGATACACCTTACGAAGCTCCTCTGGAATGT---CCAGATTTTGCACACTG 80265 || || || ||||| | || || || || ||||| | |||||| ||||| ||| Sbjct 221596 CAAACCGTGCGATAAAGCTCCTTTAGATCGTCCGGAATCTCTGCCAGATGCTGCACGCTG 221537 Query 80266 CC 80267 || Sbjct 221536 CC 221535 >seq24 Length=407421 Score = 95.1 bits (104), Expect = 1e-14 Identities = 265/405 (65%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCG 32061 |||||||| ||| | | ||| | ||||||||||| | | || ||||||||||| Sbjct 241339 CAGCGCAAAGTGCTGTTTGCCGTCTTCAAGAAGAACACGAAGGCCGAGCTGAAGGTGGCG 241280 Query 32062 CAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAG 32121 || || || || || || || ||||| | || ||||||||||||||| ||| | ||| Sbjct 241279 CAACTCTCTGGGTATGTTGCCGAGCAGAGTGCGTATCACCACGGCGAGCAGTCTTTGCAG 241220 Query 32122 GGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAG 32181 ||||| | | | | || ||| || || || || || || || || || ||| Sbjct 241219 CAAACCATCATTACCATGGCCCAGCGGTTCGTTGGAAGCAACAATCTTAATTTCCTTGAG 241160 Query 32182 CCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTAC 32241 || ||| ||||| || || | | || || |||||||| | |||| ||| Sbjct 241159 CCCGTTGGTCAGTTCGGATCCAGAAAAGAGGGCGGGAAGGATGCGTCTGCACCCCGCTAC 241100 Query 32242 ATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCG--TCGGACGATGCGG 32299 ||||| || |||||||| | || ||| ||||| |||| | || || | Sbjct 241099 ATCTTTACAAAGCTCGCACCGTACACACGCCTCGTTTTC--CCCGAAGCCGATGACCCTC 241042 Query 32300 TGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGC 32359 ||||| ||||| | ||| || || ||| | |||||||| | |||| ||| || Sbjct 241041 TGCTCGAGTACCTCTATGAGGAGGGGCAGAAGATCGAGCCGAAATACTACGTTCCTGTCA 240982 Query 32360 TTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGGGT 32404 | || | | | || ||||| ||||||||||| ||||||| Sbjct 240981 TCCCCACCGTGCTTGTCAACGGCAGCGAAGGCATCGGCACGGGGT 240937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304233518800