Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq597 87.8 2e-12 >seq597 Length=1570 Score = 87.8 bits (96), Expect = 2e-12 Identities = 179/259 (69%), Gaps = 14/259 (5%) Strand=Plus/Minus Query 74583 CCATATAATTTCGTTAATAAATTTTTTATAGCCAAAAATATCATCCATTAAT--ATCTTT 74640 ||| ||||||||||| |||| || ||||| |||||||||||||||| |||| | | Sbjct 1313 CCAAATAATTTCGTTTCTAAAATTATTATACCCAAAAATATCATCCA-TAATGCAAC-GC 1256 Query 74641 ATATAATGATTTAGTCTCCAATCCATATGTAAACAAATTATTCCATTGTTGGTTAAAATC 74700 | ||||||| | || |||||| |||||| |||| |||| |||| | || | Sbjct 1255 AACCAATGATTAACCCTTGTATCCATTTGTAAATAAATACTTCCTGTGTTTTTCAATACT 1196 Query 74701 CTTTTCATCTCTATTATTCTAGGTCTATA---CCATTCAATT--GCTTCTTGTGGGGTTC 74755 | | ||| ||| ||| ||| || ||| ||||||| |||||| | || || Sbjct 1195 CGGTGCATTTCTTTTAATCTTGGCAAATAATGTGCTTCAATTTCGCTTCTAATCGGTTT- 1137 Query 74756 CTAAATTATCATTATAATCTTTAAACTTTTTTCCTGTATTATACAAAATATCACAATAAA 74815 ||| || | ||||| || ||| | || ||| ||| | |||||||| |||| Sbjct 1136 -TAA---GTCTTGGTAATCCCCGAAATTTCTACCCGTACCATAAAGTATATCACAGTAAA 1081 Query 74816 TTAAATCTACGCTTTCATC 74834 |||||||||| |||||||| Sbjct 1080 TTAAATCTACACTTTCATC 1062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452020712473200