Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq553 134 1e-26 seq43 120 2e-22 >seq553 Length=498168 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||||| ||||| |||||||||||||| | ||| | | | || || Sbjct 350830 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 350771 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || || || |||| |||||||||||| | || | |||||||| || Sbjct 350770 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 350711 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || ||| ||| | || | ||||| || | | ||||| |||| ||| || || || Sbjct 350710 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 350651 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| ||||||||||||||||| Sbjct 350650 CCCGTGAGGGTTTTCACGAAGATTTGCAT 350622 >seq43 Length=112461 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || |||| | || |||| ||||| || |||||| || ||||||||||| Sbjct 60609 CATGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATC 60668 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| | | || ||||||||||| |||||||| || | |||||||||||| | Sbjct 60669 AGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGG 60728 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||||| || | ||||| || | | || Sbjct 60729 AGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTC 60788 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| ||||| || || || ||||| ||||| || ||||| ||||| Sbjct 60789 AACATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 60839 Score = 114 bits (126), Expect = 9e-21 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44106 TCATTCCCCCTCTC--AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 ||||| ||| ||| || | || |||| ||||| || |||||| || |||||||| Sbjct 60378 TCATTGCCCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTA 60437 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| | | || ||||||||||| |||||||| || | |||||||||||| Sbjct 60438 ATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATC 60497 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | |||||||| ||| ||||| ||||| || | ||||| || | | Sbjct 60498 AGGAGGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGG 60557 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||| || || ||||| || || || |||||||| || || |||||| Sbjct 60558 CTCAACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCATG 60612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359986604913705