Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq553 140 8e-28 seq43 136 1e-26 >seq553 Length=498168 Score = 140 bits (154), Expect = 8e-28 Identities = 150/198 (76%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||||||||| ||||| || ||||| ||||| || || ||||| Sbjct 350619 AAAATGC---AAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAG 350675 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || |||||||| || || || || || || ||||| ||||| || || || Sbjct 350676 CCTTCGGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCT 350735 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || || ||||| |||||||||||||| ||||| ||||| || | ||| Sbjct 350736 GATCAGCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGAT 350795 Query 178095 TATAACGTCCAAAAAGAA 178112 || ||| |||| || ||| Sbjct 350796 TACAACATCCAGAAGGAA 350813 >seq43 Length=112461 Score = 136 bits (150), Expect = 1e-26 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||||||||| ||||| || || || || || || ||||| Sbjct 60836 CAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATCAGAT 60777 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||| ||||| || ||||| || ||||| || ||||| Sbjct 60776 ACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGCAG 60717 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| || ||||| || ||||| ||||| ||| | ||||| ||| | Sbjct 60716 CGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAACATT 60657 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || ||||| || ||| | ||| || Sbjct 60656 CAGAAGGAGTCAACCCTTCATTTGGTTCTG 60627 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || || || || ||||| | || || || ||||| Sbjct 60608 CAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCAGAT 60549 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||||||||| || ||||| || ||||| || ||||| Sbjct 60548 ACCATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAGCAG 60489 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| || ||||| || ||||| ||||| ||| | ||||| ||| | Sbjct 60488 CGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAACATT 60429 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || ||||| || ||| | ||| || Sbjct 60428 CAGAAGGAGTCAACCCTTCATTTGGTTCTG 60399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203717859272810