Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq545 120 3e-22 seq961 93.3 4e-14 >seq545 Length=63443 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| ||||| |||||||| ||||||||||| | ||||| || | Sbjct 2380 AAAATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCT 2439 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | ||| | |||| ||||| | ||||| || ||||| || | || Sbjct 2440 TCGGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGAT 2499 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || || | ||| || |||||||| || || | | | |||||| || ||| Sbjct 2500 CAGCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTAC 2559 Query 40867 AACATCCAGAAGGA 40880 |||||||||||||| Sbjct 2560 AACATCCAGAAGGA 2573 >seq961 Length=12354 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 116618 CCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACC 116677 ||||| || ||| ||| ||||| ||||| || ||||| ||||| || || ||||| Sbjct 5308 CCCATTCAGTACAAGGAAGTGTGGGATATGTATAAGAAGGCGGAGGCCTCTTTTTGGACA 5249 Query 116678 GTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAG 116737 | ||||||| | ||||| || |||| | |||||||| | ||||| | | ||| Sbjct 5248 GCCGAGGAGATCGACCTACACAGGGACTTGGTAGACTGGGAAAGTCTGAACAAGGATGAG 5189 Query 116738 CGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAG 116778 | || ||||| ||||| ||||| ||||||||||| || || Sbjct 5188 CAGCACTTCATTAAGCATGTGCTTGCCTTTTTCGCTGCAAG 5148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210885650160