Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq578 87.8 2e-12 >seq578 Length=112255 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||||||||| || || || || ||||| || || || | || || || | Sbjct 51551 CATGCAGATATTTGTGAAGACTTTGACTGGCAAGACAATCACATTGGACGTTGAGCCATC 51610 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 || | | |||| ||| |||| ||| ||| | || |||||| | || ||| || Sbjct 51611 AGATACCATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCA 51670 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||| | || | ||| ||||| || ||||| ||| || ||| | ||||||| Sbjct 51671 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAA 51730 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAAT 25063 ||| ||||| ||| | || |||||||| || | || | || || || |||| Sbjct 51731 CATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTCTACGAGGCGGGCAAT 51783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418297418378720