Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq578 127 2e-24 seq545 111 1e-19 >seq578 Length=112255 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||||||||| ||||| || ||||| | |||||||| || || Sbjct 51095 CATGCAGATATTCGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATC 51154 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | |||||| || || || || || ||| ||||||||| | || || || | Sbjct 51155 AGATACCATCGAAAATGTGAAGGCAAAG-ATCCAGGATAAGGAAGGCATTCCTCCTGATC 51213 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || || || ||||| ||| |||| ||| | ||| | ||||| | Sbjct 51214 AGCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTTCTGATTACA 51273 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||| || || || || |||||| |||| || | ||||||| || Sbjct 51274 ACATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 51322 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||||||||| ||||| || ||||| | |||||||| || || Sbjct 51323 CATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATC 51382 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | |||||| || || || || || ||| ||||||||| | || || || | Sbjct 51383 AGATACCATCGAAAATGTGAAGGCAAAG-ATCCAGGATAAGGAAGGCATTCCTCCTGATC 51441 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || || || ||||| ||| |||| ||| | ||| | ||||| | Sbjct 51442 AGCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTTCTGATTACA 51501 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||| || || || || |||||| |||| || | ||||||| || Sbjct 51502 ACATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 51550 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || |||||| |||| ||||| || ||||| | |||||||| || || Sbjct 51551 CATGCAGATATTTGTGAAGACTTTGACTGGCAAGACAATCACATTGGACGTTGAGCCATC 51610 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | |||||| || || || ||| | ||| ||||||||| | || || || | Sbjct 51611 AGATACCATCGAAAATGTGAAGGCAAAGATTCA-GGATAAGGAAGGCATTCCTCCTGATC 51669 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || || || ||||| ||| |||| || | ||| | ||||| | Sbjct 51670 AGCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACA 51729 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||| || || || || |||||| |||| || Sbjct 51730 ACATTCAGAAGGAGTCAACCCTTCATTTGGTTCT 51763 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| ||||| ||||| || || | || ||||| || || Sbjct 50868 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATCA 50927 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||||| || || || ||| | ||| ||||||||| | || || || || Sbjct 50928 GATACCATCGAAAATGTGAAGGCAAAGA-TCCAGGATAAGGAAGGCATTCCTCCTGATCA 50986 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || || ||||| ||| |||| || | ||| | ||||| || Sbjct 50987 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAA 51046 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || || || || |||||| |||| || | ||||||| || Sbjct 51047 CATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 51094 >seq545 Length=63443 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| ||||| || || || || || ||||| ||||| | ||||| || || Sbjct 2380 AAAATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCT 2439 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||||| || || || ||| |||||||||||| | ||||| || Sbjct 2440 TCGGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGAT 2499 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || |||||||| |||||| | || || | ||| | ||||| Sbjct 2500 CAGCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTAC 2559 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTAC 31403 ||||| || || ||| |||||||| |||||| Sbjct 2560 AACATCCAGAAGGAAAGCACTCTTCACTTGGTAC 2593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445759206444720