Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq578 104 2e-17 seq545 86.0 6e-12 >seq578 Length=112255 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || ||||||| ||||| ||| ||||||| || || || || || ||||||||||| Sbjct 51781 TGCCCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCA 51722 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | ||| || || || || || || || ||| | || ||||| |||||||| ||| Sbjct 51721 GAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGA 51662 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || |||||||| || || ||| ||| || | | ||| | || || | || || Sbjct 51661 GGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCA 51602 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || | |||||||| ||||| || || || ||||| ||||| Sbjct 51601 ACGTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTCACAAATATCTGCAT 51552 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||||| ||| ||||||| || || || || || ||||||||||| | ||| || Sbjct 51313 AAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTG 51254 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 ||| || || || || || ||| | || ||||| |||||||| ||||| |||||||| Sbjct 51253 CCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCC 51194 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 || || || ||| || | | ||| | || || | || || || || | || Sbjct 51193 TTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTG 51134 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | |||||||| |||| || || |||||||| ||||| Sbjct 51133 ATTGTCTTGCCAGTCAGAGTCTTCACGAATATCTGCAT 51096 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||||| ||| ||||||| || || || || || ||||||||||| | ||| || Sbjct 51541 AAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTG 51482 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 ||| || || || || || ||| | || ||||| |||||||| ||||| |||||||| Sbjct 51481 CCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCC 51422 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 || || || ||| || | | ||| | || || | || || || || | || Sbjct 51421 TTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTG 51362 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | |||||||| |||| || || || ||||| ||||| Sbjct 51361 ATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 51324 >seq545 Length=63443 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 142993 TTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATA 143052 ||| || || ||||||||||| | || ||| || ||||| ||||| ||||| | Sbjct 2574 TTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTGTTTTCCAGCGAA 2515 Query 143053 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112 |||||||| |||||||| || || |||||||| ||||| ||||| |||| | Sbjct 2514 AATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTTCGCCTTTACATT 2455 Query 143113 TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172 ||| | || |||| || || || || | || | || || || || | ||||| || Sbjct 2454 TTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGTGAGGGTTTTCAC 2395 Query 143173 GAATATTTGCAT 143184 ||| |||||||| Sbjct 2394 GAAGATTTGCAT 2383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507006218055120