Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq578 107 2e-18 seq545 105 6e-18 >seq578 Length=112255 Score = 107 bits (118), Expect = 2e-18 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 || |||||||| || |||||| |||||||||||||||| || |||| || | |||| Sbjct 51076 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA-AAGTGTC-CTGCCATCCT 51019 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | |||| | |||||||||||| || | | |||||| ||| Sbjct 51018 CCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCT 50959 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | |||||||| | | ||| || | || ||||||| Sbjct 50958 GGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTT 50899 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | || |||||||| || ||||| |||||||| ||| Sbjct 50898 TCCCTGTGAGAGTCTTGACAAAGATCTGCATTGTG 50864 Score = 105 bits (116), Expect = 6e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 || |||||||| || |||||| |||||||||||||||| || |||| || |||||| Sbjct 51532 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA-AAGTGTC-CTGCCGTCCT 51475 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | |||| | |||||||||||| || | | |||||| ||| Sbjct 51474 CCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCT 51415 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | |||||||| | | ||| || | ||| || || | Sbjct 51414 GGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCT 51355 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || ||||| |||||||| |||||||| Sbjct 51354 TGCCAGTCAGAGTCTTCACAAATATCTGCAT 51324 Score = 100 bits (110), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 || |||||||| || |||||| |||||||||||||||| || |||| || |||||| Sbjct 51304 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA-AAGTGTC-CTGCCGTCCT 51247 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | |||| | |||||||||||| || | | |||||| ||| Sbjct 51246 CCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCT 51187 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | |||||||| | | ||| || | ||| || || | Sbjct 51186 GGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCT 51127 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || ||||| ||||| || |||||||| Sbjct 51126 TGCCAGTCAGAGTCTTCACGAATATCTGCAT 51096 Score = 100 bits (110), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 || |||||||| || |||||| |||||||||||||||| || |||| || | |||| Sbjct 51760 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA-AAGTGTC-CTGCCATCCT 51703 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | |||| | |||||||||||| || | | |||||| ||| Sbjct 51702 CCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCT 51643 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | | |||||||| | | ||| || | ||| || || | Sbjct 51642 GAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCT 51583 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | ||| |||||||| |||||||| Sbjct 51582 TGCCAGTCAAAGTCTTCACAAATATCTGCAT 51552 >seq545 Length=63443 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||||| ||||| || ||||||||||| | | | | | ||||| Sbjct 2591 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 2532 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| || || || |||| | |||||||||||| ||| | | ||||||||| Sbjct 2531 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 2472 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 |||||| ||| | | | |||||||| | || |||| || | || |||||||| Sbjct 2471 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 2412 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || ||||| |||||||| || || ||||| ||||| Sbjct 2411 CCCGTGAGGGTTTTCACGAAGATTTGCATTTTGTCT 2376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421244572007291