Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq949 136 3e-27 seq578 132 3e-26 seq545 95.1 8e-15 >seq949 Length=3495 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2499 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2440 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 2439 TAATCCATTCATGCACGTCACTAATTAGATGACGA 2405 Score = 100 bits (110), Expect = 2e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||| |||| |||||||||||||||||||||||| Sbjct 419 CTCTCTTTCCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCGC 360 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| |||| Sbjct 359 GCCAATATTTAGCTTTAT 342 >seq578 Length=112255 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||||||||| ||||||||||| || |||||| ||||| ||||||||||| Sbjct 51322 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51263 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | |||| || | || || |||||||| || || || || ||||| | || Sbjct 51262 AGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 51203 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| || ||| ||||||||| | || |||||| ||||| Sbjct 51202 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 51143 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || ||||| || || || || |||| || |||||||||||||||||| Sbjct 51142 TCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACGAATATCTGCATG 51095 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||||||||| ||||||||||| || |||||| ||||| ||||||||||| Sbjct 51550 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51491 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | |||| || | || || |||||||| || || || || ||||| | || Sbjct 51490 AGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 51431 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| || ||| ||||||||| | || |||||| ||||| Sbjct 51430 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 51371 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || ||||| || || || || |||| || ||||| |||||||||||| Sbjct 51370 TCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCATG 51323 Score = 127 bits (140), Expect = 1e-24 Identities = 181/251 (72%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 38069 ACAAATACAAATCCAATCATTACCA-CCTCTCAAACGCAACACCAAATGAAGAGTGCTCT 38127 ||| |||||| |||| ||||| || |||| | ||||| ||||||||||| || || Sbjct 51799 ACATATACAA-TCCA-TCATTGCCCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACT 51742 Query 38128 CCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATA 38187 |||| ||||| ||||||||||| | | | || || | || || |||||||| | Sbjct 51741 CCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAA 51682 Query 38188 TTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 | || || || ||||| | || | |||||| || ||| ||| ||| ||||||||| | Sbjct 51681 TGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTT 51622 Query 38248 GGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGA 38307 || |||||| ||||| || ||||| || || || || ||||| || ||||| | Sbjct 51621 CGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTCACAA 51562 Query 38308 ATATCTGCATG 38318 ||||||||||| Sbjct 51561 ATATCTGCATG 51551 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||||||||| ||||||||||| || |||||| ||||| ||||||||||| Sbjct 51094 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51035 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | || || |||||||| || || || || ||||| | || Sbjct 51034 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 50975 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| || ||| ||||||||| | || |||||| ||||| Sbjct 50974 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 50915 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| ||||| || || | || || || || |||||||| Sbjct 50914 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 50868 >seq545 Length=63443 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||||||||| ||||| || || |||||||| || | | | || || Sbjct 2591 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 2532 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||| || || || || || || ||||| | || | |||||| ||||| Sbjct 2531 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 2472 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| ||||| | || ||||| | || || || | || || ||||| Sbjct 2471 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 2412 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| | |||||||||||| || ||||| || Sbjct 2411 CCCGTGAGGGTTTTCACGAAGATTTGCATTTT 2380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334941929919821