Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq578 125 6e-24 seq545 113 4e-20 seq548 87.8 2e-12 >seq578 Length=112255 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || ||||| | ||||| || || || | | Sbjct 50868 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATCA 50927 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||| || || || ||||| || ||||| || ||||| Sbjct 50928 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 50987 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | |||||| | | || | || ||||||||| Sbjct 50988 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAAC 51047 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | ||||| ||| |||| ||| | || || Sbjct 51048 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 51094 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || || |||| | || || || | | Sbjct 51552 ATGCAGATATTTGTGAAGACTTTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 51611 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||| ||||| || ||||| || ||||| || ||||| Sbjct 51612 GATACCATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 51671 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | |||||| | | || | || ||||||||| Sbjct 51672 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAAC 51731 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || || || ||| | ||||| ||| |||| Sbjct 51732 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCG 51766 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || |||| | || || || | | Sbjct 51324 ATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 51383 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||| || || || ||||| || ||||| || ||||| Sbjct 51384 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 51443 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| | | || | || ||||||||| Sbjct 51444 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTTCTGATTACAAC 51503 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | ||||| ||| |||| ||| | || || Sbjct 51504 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 51550 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || |||| | || || || | | Sbjct 51096 ATGCAGATATTCGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 51155 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||| || || || ||||| || ||||| || ||||| Sbjct 51156 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 51215 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| | | || | || ||||||||| Sbjct 51216 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTTCTGATTACAAC 51275 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | ||||| ||| |||| ||| | || || Sbjct 51276 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGG 51322 >seq545 Length=63443 Score = 113 bits (124), Expect = 4e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || ||||| | || || ||||| |||| || || ||||| | Sbjct 2380 AAAATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCT 2439 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || ||||| ||||||||||| || ||||| || ||| Sbjct 2440 TCGGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGAT 2499 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || || || |||||| | |||||| | ||| |||| |||||| Sbjct 2500 CAGCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTAC 2559 Query 22396 AACATTCAAAAAGAA 22410 ||||| || || ||| Sbjct 2560 AACATCCAGAAGGAA 2574 >seq548 Length=147261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 129737 TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGAT 129796 ||||||| || |||||| ||||| |||||| | |||| | ||||| | | || | Sbjct 106472 TGTACTCCACGATTTCGCAGCACAGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGT 106413 Query 129797 TACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG 129856 | || ||| ||||||| || || |||||||||||||| || ||||| ||||||| |||| Sbjct 106412 TGCTCTTCCTGTTGCATGCGTCCTTGTACATCATGTAGGGGGTGCCTGTTTCGATCTGCG 106353 Query 129857 TTT 129859 || Sbjct 106352 ATT 106350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419721395973415