Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq578 109 5e-19 >seq578 Length=112255 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 ||||| ||||| | || ||| ||||| | || || || || |||||||||||||| Sbjct 51778 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51719 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || | ||| || || || || || || | ||||||||||| || || |||||| Sbjct 51718 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 51659 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||||||| || || ||||||| || | | ||| | ||| || | | || ||| Sbjct 51658 ATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 51599 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| || | || ||||| |||| ||| || ||||| ||||||||| Sbjct 51598 TCCAATGTGATTGTCTTGCCAGTCAAAGTCTTCACAAATATCTGCATG 51551 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 || ||| ||||| | || || || || |||||||||||||| | || | || Sbjct 51536 CAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCGTC 51477 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 || || || || || || | ||||||||||| || || |||||||||||||| || || Sbjct 51476 CTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATC 51417 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 |||||| || | | ||| | ||| || | | || ||||||| || | || Sbjct 51416 CTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGT 51357 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||| |||||||| || ||||| ||||||||| Sbjct 51356 CTTGCCAGTCAGAGTCTTCACAAATATCTGCATG 51323 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 || ||| ||||| | || || || || |||||||||||||| | || | || Sbjct 51308 CAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCGTC 51249 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 || || || || || || | ||||||||||| || || |||||||||||||| || || Sbjct 51248 CTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATC 51189 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 |||||| || | | ||| | ||| || | | || ||||||| || | || Sbjct 51188 CTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGT 51129 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||| |||||||| || || || ||||||||| Sbjct 51128 CTTGCCAGTCAGAGTCTTCACGAATATCTGCATG 51095 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 || ||| ||||| | || || || || |||||||||||||| | || | ||| Sbjct 51080 CAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATC 51021 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 || || || || || || | ||||||||||| || || |||||||||||||| || || Sbjct 51020 CTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATC 50961 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 |||||| || | | ||| | ||| || | | || || |||| || | || Sbjct 50960 CTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGT 50901 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || ||||| || ||||| |||||||| Sbjct 50900 TTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 50868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420127789579092