Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq545 123 6e-23 seq961 102 2e-16 seq578 102 2e-16 >seq545 Length=63443 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 288263 GTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTT 288322 |||| | |||| |||||||| || ||||| || || || | ||| || | || || | Sbjct 2593 GTACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCT 2534 Query 288323 CTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCT 288382 | | |||||||| ||||| ||||||||||| ||| | || || ||||| || || | Sbjct 2533 CGAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTT 2474 Query 288383 GGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCT 288442 |||||||||| || || ||||| || | ||| | || || || |||||||| || | Sbjct 2473 GGATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTT 2414 Query 288443 TCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 |||| || || || || ||||| || |||||| ||| Sbjct 2413 TCCCCGTGAGGGTTTTCACGAAGATTTGCATTTTGT 2378 >seq961 Length=12354 Score = 102 bits (112), Expect = 2e-16 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 269170 CTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAG 269229 |||||| ||||| ||||||||||| || ||||| || |||| || || | ||| Sbjct 3403 CTCATGGCACAATACATCGAATTCGTTGCGGATCGGCTCCTCACATGTCTTGGCTCTGAC 3344 Query 269230 AAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAG 269289 || | | ||| | | ||||||||| | ||||||||| || || || ||| |||| || Sbjct 3343 AAGATTTTCAACGCTAGGAATCCCTTTGACTTTATGGACCTGATCTCTCTCCAAGGTAAA 3284 Query 269290 ACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG----AATCC 269345 || ||||||||||| ||||| ||| | ||||| ||| | || || ||| || | Sbjct 3283 ACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAAAAGGCCGGCGTGATGGTACAAAAC 3224 Query 269346 A--GAAGA-CAATATTTTTGCCATCGATGATGATTTTTAA 269382 | ||||| ||| | |||| | |||||| |||||| ||| Sbjct 3223 AAGGAAGAGCAACAGTTTT-CTCTCGATGCTGATTTCTAA 3185 >seq578 Length=112255 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || || | || || | ||||| || | || || || || || Sbjct 51286 TCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAA 51227 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| | || || ||||| ||||||||||| || || ||||| ||| Sbjct 51226 ATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTT 51167 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || | ||||| ||||| || ||||||||||| ||| Sbjct 51166 TCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACG 51107 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 51106 AATATCTGCAT 51096 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || || | || || | ||||| || | || || || || || Sbjct 51514 TCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAA 51455 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| | || || ||||| ||||||||||| || || ||||| ||| Sbjct 51454 ATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTT 51395 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || | ||||| ||||| || ||||||||||| || Sbjct 51394 TCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACA 51335 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 51334 AATATCTGCAT 51324 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || || |||||||| ||| | || || ||||| ||||||||||| Sbjct 51013 TGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATC 50954 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || ||||| ||||| || | ||| | || || || || || || || ||||| Sbjct 50953 TTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCT 50894 Query 288448 GTCAGAGTCTTGACGAATATCTGCATTATG 288477 || ||||||||||| || ||||||||| || Sbjct 50893 GTGAGAGTCTTGACAAAGATCTGCATTGTG 50864 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || || |||||||| ||| | || || ||||| |||||||| || Sbjct 51697 TGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATC 51638 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || ||||| ||||| || | ||| | || || || | ||||| ||||| || Sbjct 51637 TTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCA 51578 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 |||| |||||| || ||||||||||| Sbjct 51577 GTCAAAGTCTTCACAAATATCTGCAT 51552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179634887410298