Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq961 111 3e-19 >seq961 Length=12354 Score = 111 bits (122), Expect = 3e-19 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 ||||||| ||| |||||||||||||| || || || | ||| ||||| | ||| Sbjct 3403 CTCATGGCACAATACATCGAATTCGTTGCGGATCGGCTCCTCACATGTCTTGGCTCTGAC 3344 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || | | |||| | | ||| ||||||| ||||||||| || || || || ||||| ||| Sbjct 3343 AAGATTTTCAACGCTAGGAATCCCTTTGACTTTATGGACCTGATCTCTCTCCAAGGTAAA 3284 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATG-----AAAC 243757 || ||||||||||| ||||| ||| |||| || ||| | || |||||| |||| Sbjct 3283 ACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAAAAGGCCGGCGTGATGGTACAAAAC 3224 Query 243758 CAG--AGGATAACATTTTTGCGATTGATGATGATTTTTAA 243795 || || |||| |||| | | |||| |||||| ||| Sbjct 3223 AAGGAAGAGCAACAGTTTT-CTCTCGATGCTGATTTCTAA 3185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102861757330850