Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq545 98.7 7e-16 seq578 93.3 3e-14 >seq545 Length=63443 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || ||||||||||| ||| | ||| | || || Sbjct 2591 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 2532 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| |||||| | |||| |||||| || || ||||| ||||||||||| Sbjct 2531 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 2472 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| |||||| |||| || ||||| | || ||||| | || |||||||| Sbjct 2471 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 2412 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || || |||||||| || Sbjct 2411 CCCGTGAGGGTTTTCACGAAGATTTGCATTTT 2380 >seq578 Length=112255 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| | ||| | | ||| ||||||||||| || || || || ||||||||||| Sbjct 51096 TGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG 51037 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | || | || || | || ||||| || | || | |||||| || || | Sbjct 51036 AAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAG 50977 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||| |||||||| || || ||||| || ||| |||| || ||||| || Sbjct 50976 GAATGCCTTCCTTATCCTGGATCTTTGCCTTC-ACATTTTCGATGGTATCTGATGGCTCA 50918 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||||||||||| ||||| ||||| || ||||| || ||||| Sbjct 50917 ACATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 50868 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| | ||| | | ||| ||||||||||| || || || || ||||||||||| Sbjct 51552 TGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG 51493 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | || |||| || | || ||||| || | || | |||||| || || | Sbjct 51492 AAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAG 51433 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||| |||||||| || || ||||| || ||| |||| || ||||| || Sbjct 51432 GAATGCCTTCCTTATCCTGGATCTTTGC-CTTCACATTTTCGATGGTATCTGATGGCTCA 51374 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || || || |||||||| || ||||| || ||||| Sbjct 51373 ACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 51324 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| | ||| | | ||| ||||||||||| || || || || ||||||||||| Sbjct 51324 TGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG 51265 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | || |||| || | || ||||| || | || | |||||| || || | Sbjct 51264 AAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAG 51205 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||| |||||||| || || ||||| || ||| |||| || ||||| || Sbjct 51204 GAATGCCTTCCTTATCCTGGATCTTTGC-CTTCACATTTTCGATGGTATCTGATGGCTCA 51146 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || || || |||||||| || || || || ||||| Sbjct 51145 ACGTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACGAATATCTGCAT 51096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357386376771935