Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq578 86.0 4e-12 >seq578 Length=112255 Score = 86.0 bits (94), Expect = 4e-12 Identities = 179/256 (70%), Gaps = 13/256 (5%) Strand=Plus/Minus Query 39471 ACAAATACATATCCAATCATCGCC-GCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTT 39529 ||| ||||| ||||| |||| ||| |||||| | |||||| |||||||| | || | Sbjct 51799 ACATATACA-ATCCA-TCATTGCCCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACT 51742 Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTT--CATCGTCCAATTGTTTCCCGCCAAA 39587 | || || || || ||||| | ||| | | |||| |||| || || ||| |||| Sbjct 51741 CCTTCTGAATGTTGTAATCAG--AAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAA 51684 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-AT 39644 ||| | |||||||||||| | || | |||||| || || | | | |||| || | || Sbjct 51683 AATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATC-CTGAATCTTTGCCTTCACAT 51625 Query 39645 CGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTT 39704 ||| | || |||| || |||||||| || ||||| || || || ||||| || Sbjct 51624 TTTCG--ATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTCAAAGTCTT 51567 Query 39705 TACGAAGATCTGCATG 39720 || || ||||||||| Sbjct 51566 CACAAATATCTGCATG 51551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347364134465003