Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq578 127 8e-24 seq441 96.9 1e-14 >seq578 Length=112255 Score = 127 bits (140), Expect = 8e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || || || || ||||| |||||||| |||||||| |||| Sbjct 50867 AATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATC 50926 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| ||| | | || ||| || || ||||||||||| |||||||||||||| Sbjct 50927 AGATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 50986 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | ||||| | || || || || || ||||| || || | | ||||| || Sbjct 50987 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAA 51046 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| |||| ||||| || || Sbjct 51047 CATTCAGAAGGAGTCAACCCTTCATTTGGT 51076 Score = 111 bits (122), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || | || ||||| |||| Sbjct 51096 ATGCAGATATTCGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 51155 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | || ||| || || ||||||||||| |||||||||||||| Sbjct 51156 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 51215 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | ||||| | || || || || || || || || || | | ||||| || Sbjct 51216 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTTCTGATTACAAC 51275 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| |||| ||||| || || Sbjct 51276 ATTCAGAAGGAGTCAACCCTTCATTTGGT 51304 Score = 111 bits (122), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || || || || | || ||||| |||| Sbjct 51552 ATGCAGATATTTGTGAAGACTTTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 51611 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | || ||| ||||| ||||||||||| |||||||||||||| Sbjct 51612 GATACCATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 51671 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | ||||| | || || || || || ||||| || || | | ||||| || Sbjct 51672 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAAC 51731 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| |||| ||||| || || Sbjct 51732 ATTCAGAAGGAGTCAACCCTTCATTTGGT 51760 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||||||| || || || || | || ||||| |||| Sbjct 51324 ATGCAGATATTTGTGAAGACTCTGACTGGCAAGACAATCACATTGGACGTTGAGCCATCA 51383 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | || ||| || || ||||||||||| |||||||||||||| Sbjct 51384 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 51443 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | ||||| | || || || || || || || || || | | ||||| || Sbjct 51444 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACACTTTCTGATTACAAC 51503 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| |||| ||||| || || Sbjct 51504 ATTCAGAAGGAGTCAACCCTTCATTTGGT 51532 >seq441 Length=177244 Score = 96.9 bits (106), Expect = 1e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || |||||||||| || |||||||||||||||||||| |||||||| || || | Sbjct 156411 ATGCGGTTGTTACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGCAACAAAGGACG 156352 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| || || || | ||||| | || || | ||||| || || || |||||| Sbjct 156351 CAGGCGCAATCGCGGGGCTTAATGTAATCCGTATCCTCAATGAGCCCACTGCGGCTGCTA 156292 Query 451440 TAGCATATGGA 451450 | ||||||||| Sbjct 156291 TTGCATATGGA 156281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975685719765428