Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq578 113 3e-20 seq545 109 4e-19 >seq578 Length=112255 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||||| |||| || || ||||||||||| || || ||| Sbjct 51094 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51035 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| |||||||| || |||||||| || || || ||||| || | || Sbjct 51034 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 50975 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| || || | | || | || | ||||||| Sbjct 50974 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 50915 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || |||||||| || ||||||||||| |||||||||||||| Sbjct 50914 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 50868 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||||| |||| || || ||||||||||| || || ||| Sbjct 51550 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51491 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | | || |||||||| || |||||||| || || || ||||| || | || Sbjct 51490 AGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 51431 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| || || | | || | || | |||||| Sbjct 51430 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 51371 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || || || || || |||||||||||||| |||||||| Sbjct 51370 TCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 51324 Score = 89.7 bits (98), Expect = 3e-13 Identities = 175/254 (69%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 34730 GGTACATATGCATATCCAATCATTTCCTCCCCTC--AACCTCAAAACCAAGTGAATTGTG 34787 || |||||| || ||||| ||||| || | |||| | | || |||||| |||| || Sbjct 51802 GGGACATATACA-ATCCA-TCATTGCC-CGCCTCGTAGACGCAGAACCAAATGAAGGGTT 51746 Query 34788 CTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCA 34847 || ||||||||||| || || ||||| | | |||| |||||||| || |||||| Sbjct 51745 GACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCA 51686 Query 34848 AATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG 34907 || || || || ||||| || | || | || ||||| || |||||| || || Sbjct 51685 AAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACA 51626 Query 34908 GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | | || | || | |||||| || | || || || || || || | ||||||| Sbjct 51625 TTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTC 51566 Query 34968 ACAAAGATCTGCAT 34981 ||||| |||||||| Sbjct 51565 ACAAATATCTGCAT 51552 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||||| |||| || || ||||||||||| || || ||| Sbjct 51322 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51263 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | | || |||||||| || |||||||| || || || ||||| || | || Sbjct 51262 AGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 51203 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| || || | | || | || | |||||| Sbjct 51202 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 51143 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || || || || || ||||||||||| || |||||||| Sbjct 51142 TCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACGAATATCTGCAT 51096 >seq545 Length=63443 Score = 109 bits (120), Expect = 4e-19 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| |||||||| ||||| ||||| || ||||| ||| | | |||| || Sbjct 2591 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 2532 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||||||| || || || || || ||||| || |||| | || |||||||| Sbjct 2531 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 2472 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 || ||| || || || | ||||| | ||| | ||| || || | || ||||| Sbjct 2471 ATTTTCGCCTTTAC--AT--TTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGT 2416 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| |||||||| || ||||| ||||| ||||| || Sbjct 2415 TTTCCCCGTGAGGGTTTTCACGAAGATTTGCATTTT 2380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324628492194648