Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq578 122 7e-23 >seq578 Length=112255 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | ||| |||| |||||||| || || ||| || ||||| ||||||||||| Sbjct 51778 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51719 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | || |||| |||||| |||||||| || || ||||| ||||| | ||| Sbjct 51718 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 51659 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| ||||| || ||||||| || ||| | | | ||||| | ||| || Sbjct 51658 ATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 51599 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||||||| || ||||| |||||||| Sbjct 51598 TCCAATGTGATTGTCTTGCCAGTCAAAGTCTTCACAAATATCTGCAT 51552 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | |||| |||||||| || || ||| || ||||| ||||||||||| Sbjct 51095 GCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA 51036 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | | || |||| |||||| |||||||| || || ||||| ||||| | || Sbjct 51035 AAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGG 50976 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| ||||| || |||||| || ||| | | | ||||| | ||| || Sbjct 50975 AATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAAC 50916 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| ||||| ||||| || || | ||| || ||||| |||||||| ||| Sbjct 50915 ATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATTGTG 50864 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | |||| |||||||| || || ||| || ||||| ||||||||||| Sbjct 51551 GCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA 51492 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | |||| |||| |||||| |||||||| || || ||||| ||||| | || Sbjct 51491 AAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGG 51432 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| ||||| || |||||| || ||| | | | ||||| | ||| || Sbjct 51431 AATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAAC 51372 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||| ||| || ||||| |||||||| Sbjct 51371 GTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCAT 51324 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | |||| |||||||| || || ||| || ||||| ||||||||||| Sbjct 51323 GCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGA 51264 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | |||| |||| |||||| |||||||| || || ||||| ||||| | || Sbjct 51263 AAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGG 51204 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| ||||| || |||||| || ||| | | | ||||| | ||| || Sbjct 51203 AATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAAC 51144 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||| ||| || || || |||||||| Sbjct 51143 GTCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACGAATATCTGCAT 51096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380931606303993