Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq545 107 1e-18 seq578 104 2e-17 >seq545 Length=63443 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||||| |||||||| ||||| || ||||| ||| | | | |||| || Sbjct 2591 ACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCG 2532 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || ||||| ||||| ||||| || ||||| || |||| | || |||||||| | Sbjct 2531 AGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGG 2472 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 ||||| || || | | || | || | ||| || || | || ||||| || Sbjct 2471 ATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTC 2412 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||||| || || ||||| ||||| Sbjct 2411 CCCGTGAGGGTTTTCACGAAGATTTGCAT 2383 >seq578 Length=112255 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | ||| |||| |||| ||| ||||||||||||||| || || || Sbjct 51094 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51035 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | |||| ||||| ||||| ||||| || || || || ||||| || | || Sbjct 51034 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 50975 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || ||| || || | | || | || | ||| ||| Sbjct 50974 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 50915 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || ||||| || || ||||| ||||| |||||||||||||| Sbjct 50914 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 50868 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | ||| |||| |||| ||| ||||||||||||||| || || || Sbjct 51550 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51491 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | | || ||||| ||||| ||||| || || || || ||||| || | || Sbjct 51490 AGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 51431 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || ||| || || | | || | || | ||| || Sbjct 51430 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 51371 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || || ||||| || || || ||||| ||||| ||||||||| Sbjct 51370 TCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACAAATATCTGCATG 51323 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | ||| |||| |||| ||| ||||||||||||||| || || || Sbjct 51322 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51263 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | | || ||||| ||||| ||||| || || || || ||||| || | || Sbjct 51262 AGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 51203 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || ||| || || | | || | || | ||| || Sbjct 51202 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 51143 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || || ||||| || || || ||||| || || ||||||||| Sbjct 51142 TCCAATGTGATTGTCTTGCCAGTCAGAGTCTTCACGAATATCTGCATG 51095 Score = 82.4 bits (90), Expect = 5e-11 Identities = 174/255 (68%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 34726 GGTACATATGCATATCCAATCATTTCCTCCCCTC--AACCTCAGGACCAGGTGAATGGTG 34783 || |||||| || ||||| ||||| || | |||| | | ||| |||| |||| ||| Sbjct 51802 GGGACATATACA-ATCCA-TCATTGCC-CGCCTCGTAGACGCAGAACCAAATGAAGGGTT 51746 Query 34784 CTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCG 34843 ||||||||||||||| || || || || | | |||| ||||| ||||| ||||| Sbjct 51745 GACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCA 51686 Query 34844 AAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG 34903 || || || || ||||| || | || | || ||||| || | || ||| || || Sbjct 51685 AAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACA 51626 Query 34904 GATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | | || | || | ||| || || | || || ||||| || || | ||||| Sbjct 51625 TTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTC 51566 Query 34964 ACAAAGATCTGCATG 34978 ||||| ||||||||| Sbjct 51565 ACAAATATCTGCATG 51551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325687675529129