Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq322 127 2e-23 seq441 116 3e-20 >seq322 Length=89083 Score = 127 bits (140), Expect = 2e-23 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 ||||||| || ||||||||||| || || || || ||||||||||| | | || Sbjct 52948 AACATCAAATGTGCCACCACCCATGTCGAAGATGAGGACATTCATTTCACCCTGTCCCTT 52889 Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 || || |||||||| || | || ||||| || || || ||||| || | | ||| || Sbjct 52888 CTTGTCCAGACCATAGGCTATGGCTGCAGCCGTAGGCTCGTTAATGATACGAAGAACGTT 52829 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||||| ||||| | || || || || ||||| || | || |||||||| || ||||| Sbjct 52828 CAGACCCGCAATAGTGCCGGCGTCCTTTGTGGCCTGGCGCTGAGAATCGTTGAAGTATGC 52769 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAA 282491 || || ||||||||||| || | |||||||| |||| Sbjct 52768 CGGTACTGTAATAACGGCCTCCTTAACTTCTTTGCCAA 52731 >seq441 Length=177244 Score = 116 bits (128), Expect = 3e-20 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| |||||| ||||| || ||||| | || | | |||||||| || || Sbjct 156282 CCATATGCAATAGCAGCCGCAGTGGGCTCATTGAGGATACGGATTACATTAAGCCCCGCG 156341 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| ||||| || || || ||||| | ||||| ||| || |||||||||||||||||| Sbjct 156342 ATTGCGCCTGCGTCCTTTGTTGCTTGGCGTTGTGCATCATTGAAATATGCAGGAACAGTA 156401 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 | ||| |||| | |||||||| |||| | ||| Sbjct 156402 ACAACCGCATTTTTTACTTCTCTTCCCAAATA 156433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740567017355766