Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq578 125 7e-24 seq548 100 3e-16 seq545 100 3e-16 >seq578 Length=112255 Score = 125 bits (138), Expect = 7e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| ||||| || |||||||| | || |||||| ||| Sbjct 51301 AAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCGTCCTCCAGC 51242 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || ||||||| |||||||| || ||||| ||||||||||| || |||| Sbjct 51241 TGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATC 51182 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | || | || || | ||||| ||||| | |||| || ||||| Sbjct 51181 TTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCA 51122 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 |||||||| || ||||| ||||||||| Sbjct 51121 GTCAGAGTCTTCACGAATATCTGCATG 51095 Score = 122 bits (134), Expect = 8e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| ||||| || |||||||| | || |||||| ||| Sbjct 51529 AAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCGTCCTCCAGC 51470 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || ||||||| |||||||| || ||||| ||||||||||| || |||| Sbjct 51469 TGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATC 51410 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | || | || || | ||||| ||||| | |||| || ||||| Sbjct 51409 TTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCA 51350 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 |||||||| || || || ||||||||| Sbjct 51349 GTCAGAGTCTTCACAAATATCTGCATG 51323 Score = 109 bits (120), Expect = 5e-19 Identities = 152/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCG 133511 ||||| | ||| ||||| ||||| || |||||||| | || || | | ||||| Sbjct 51757 AAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTG--CCA-TCCTCC 51701 Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||||||||| || ||||||| |||||||| || ||||| ||||||||||| || Sbjct 51700 AGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGA 51641 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 |||||| ||| | | || | || || | ||||| ||||| | |||| || ||| Sbjct 51640 ATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTG 51581 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || |||| ||| || || || ||||||||| Sbjct 51580 CCAGTCAAAGTCTTCACAAATATCTGCATG 51551 Score = 107 bits (118), Expect = 2e-18 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCG 133511 ||||| | ||| ||||| ||||| || |||||||| | || || | | ||||| Sbjct 51073 AAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTG--CCA-TCCTCC 51017 Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||||||||| || ||||||| |||||||| || ||||| ||||||||||| || | Sbjct 51016 AGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGG 50957 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 |||||| ||| | | || | || || | ||||| || || | || | |||||| Sbjct 50956 ATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTC 50897 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || || |||||||| Sbjct 50896 CCTGTGAGAGTCTTGACAAAGATCTGCAT 50868 >seq548 Length=147261 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 ||||| | |||||||| || ||| || || | ||||||| ||||| ||| |||| Sbjct 106509 GAGGCCAAGTTGCACACAGCGACCTCGTCGGGACTGGTGTACTCCACGATTTCGCAGCAC 106450 Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946 ||||| || || || | |||| ||| | || |||||||| |||||||| |||||| Sbjct 106449 AGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGTTGCTCTTCCTGTTGCATGCGTCC 106390 Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCA 148989 ||||||| |||||| || ||| ||||| | ||||| || || Sbjct 106389 TTGTACATCATGTAGGGGGTGCCTGTTTCGATCTGCGATTGCA 106347 >seq545 Length=63443 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||| || || ||| |||| || |||||||| || || || |||||||||||| Sbjct 2537 TCCTCGAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTG 2478 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||| | | || | || || | ||||||||||| | |||| | Sbjct 2477 TCTTGGATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATG 2418 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || ||||| ||||| || ||||| Sbjct 2417 GTTTTCCCCGTGAGGGTTTTCACGAAGATTTGCAT 2383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483412998796840