Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq545 125 7e-24 seq578 102 8e-17 >seq545 Length=63443 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||| |||||| || |||||||| || | ||| || |||||||| Sbjct 2586 GTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTG 2527 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || ||||||| |||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 2526 TTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTT 2467 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | || || || | |||||||| || || |||||||| || || Sbjct 2466 CGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGT 2407 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTGT 134718 | ||||| ||||| ||||||||||||| Sbjct 2406 GAGGGTTTTCACGAAGATTTGCATTTTGT 2378 >seq578 Length=112255 Score = 102 bits (112), Expect = 8e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTG-TGAGAGTCGTCGAGCTG 134569 || || || || ||||| ||||||||||| || || || || | || || ||||| Sbjct 51070 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCA-TCCTCCAGCTG 51012 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| |||||||| | |||||||||||| || || |||||||| || || || || || Sbjct 51011 CTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTT 50952 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | || || || | || || || | || || || |||||||||||||| || || Sbjct 50951 TGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCTGT 50892 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTG 134717 | ||| || || || || |||||| || Sbjct 50891 GAGAGTCTTGACAAAGATCTGCATTGTG 50864 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| || | || || || || ||||| ||||||||||| || | Sbjct 51778 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 51719 Query 134547 ACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || || | || || ||||| ||||| |||||||| | |||||||||||| || || Sbjct 51718 AGTGTCCTGCCA-TCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGG 51660 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || || ||||| ||| || || || | || || || | || || Sbjct 51659 AATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAAC 51600 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| | || || || || || || ||||| || || || || ||||| Sbjct 51599 GTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTCACAAATATCTGCAT 51552 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || ||||| ||||||||||| || || || ||| || ||||| Sbjct 51298 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCGTCCTCCAGCTGC 51239 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| |||||||| | |||||||||||| || || |||||||| || || || || ||| Sbjct 51238 TTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTT 51179 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | || || || | || ||||| | || || || || || || Sbjct 51178 GCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTC 51119 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | ||| || ||||| || ||||| Sbjct 51118 AGAGTCTTCACGAATATCTGCAT 51096 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || ||||| ||||||||||| || || || ||| || ||||| Sbjct 51526 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCGTCCTCCAGCTGC 51467 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| |||||||| | |||||||||||| || || |||||||| || || || || ||| Sbjct 51466 TTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTT 51407 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | || || || | || ||||| | || || || || || || Sbjct 51406 GCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTCCAATGTGATTGTCTTGCCAGTC 51347 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | ||| || || || || ||||| Sbjct 51346 AGAGTCTTCACAAATATCTGCAT 51324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505390244133320